RNA id: TU545733


Basic Information

Item Value
RNA id TU545733
length 1179
RNA type TUCP
GC content 0.41
exon number 1
gene id G480219
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17444753 ~ 17445931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAATACataaaatctatgaaataacacatactgaaccatgtagtaaccaaaaaggtgtttaacaaaacaaaatatattttatatttgagattcttcaaagtagccaccctttgatgacagctttacacactcttagcattctctcaaacagcttcgtgaggtagtcacctggaacgcatttcaattaacaagtgtgccttgataaaagttaatttgtggaatttatttccttcttaatgtgtttgagtcaatcaattgtgttgtgacaaggtaggggtggtatacagaagatagccctatttggtaaaataccaagtccatattatggcaagaacagctcaaataatcaaagagaaacaacagttcattagagttaccagcctcagaaattgcagcccaaataaatgcttcacagagttcaagtaacagacatatctcaacattaactgttcagaggagaatgcgtgaatcaggccttcatggtcgagttgctgcaaagaaaccactattaaaggacaccaataataagaagagacttgcttgccaagaaacacgagcaatggacattagactggtggaaatctgtcctttggtctgatgagtccaaatttgagatttttggttccaattgctgtgtctttgtgagatgcagagtaggtgaacggatgctctccgcatgtgtggttcccaccgtgaagcatggaagaggtgtggtggtgtgggggtgctttgctggtgacgatGTCAGTGATTTACTttgaattcaatgcacacttaaccagcatggctaccacagcattctgcagtgatatctcatctggtttgcgcttagtggacaatgacccaacacacctccaggctgtttaagggctatttgaccaagacggagagtgatggagtgctgcatcagatgacctggcctccacaatcacccaatctcaacccaattgagatggtttgtgatgagttggaccgcagagtgaagaaaaagcagccaacaagtgctcagcatacatgtgggaactccttcaagacttttggaaaagtattcaaggtgaagctggttgagagaatgccaagtgtgtgcaaagctgtcatcaaggcaaagggtggctacttttaagaatatatttgatttgtttaacacttctgctgcttactacatcattccatatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU545689 lncRNA upstream 60696 17383704 ~ 17384057 (+) True G480178
TU545648 lncRNA upstream 115781 17328751 ~ 17328972 (+) True G480139
TU545647 lncRNA upstream 116035 17328518 ~ 17328718 (+) True G480138
TU545643 lncRNA upstream 120811 17323705 ~ 17323942 (+) True G480134
TU545621 lncRNA upstream 124499 17320035 ~ 17320254 (+) True G480126
TU545734 lncRNA downstream 2638 17448569 ~ 17449504 (+) True G480220
TU545735 lncRNA downstream 3629 17449560 ~ 17449847 (+) True G480221
TU545737 lncRNA downstream 4747 17450678 ~ 17451003 (+) True G480223
TU545738 lncRNA downstream 5652 17451583 ~ 17452081 (+) True G480224
TU545744 lncRNA downstream 18603 17464534 ~ 17465153 (+) True G480230
XM_036979473.1 mRNA upstream 31897 17360752 ~ 17412856 (+) False LOC110525335
XM_036979474.1 mRNA upstream 31897 17360752 ~ 17412856 (+) False LOC110525335
XM_036979475.1 mRNA upstream 31897 17360752 ~ 17412856 (+) False LOC110525335
XM_036979476.1 mRNA upstream 31897 17360753 ~ 17412856 (+) False LOC110525335
XM_036979477.1 mRNA upstream 31897 17360753 ~ 17412856 (+) True LOC110525335
XM_021605374.2 mRNA downstream 42657 17488588 ~ 17496137 (+) False LOC110525341
XM_021605375.2 mRNA downstream 42657 17488588 ~ 17496137 (+) False LOC110525341
XR_005052029.1 mRNA downstream 80367 17526298 ~ 17534335 (+) False LOC110525345
XR_002473739.2 mRNA downstream 80373 17526304 ~ 17534335 (+) True LOC110525345
XM_021605385.2 mRNA downstream 191037 17636968 ~ 17643111 (+) True LOC110525350
TU545623 other upstream 123588 17320774 ~ 17321165 (+) True G480128
TU545405 other upstream 337326 17100986 ~ 17107427 (+) True dab2ipa
TU545301 other upstream 462533 16979182 ~ 16982220 (+) True traf1
TU544659 other upstream 1085002 16359416 ~ 16359751 (+) True G479239
TU541393 other upstream 3429189 13997084 ~ 14015564 (+) True G476248
TU545556 other downstream 271939 17717870 ~ 17718201 (+) True G480062
TU546627 other downstream 468829 17914760 ~ 17978399 (+) False LOC110525363
TU546849 other downstream 838866 18284797 ~ 18285312 (+) True G481201
TU546853 other downstream 844302 18290233 ~ 18290467 (+) True G481205
TU546804 other downstream 889401 18335332 ~ 18340566 (+) True G481159

Expression Profile