RNA id: TU548358


Basic Information

Item Value
RNA id TU548358
length 217
lncRNA type intronic
GC content 0.41
exon number 1
gene id G482540
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 19247020 ~ 19247236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAATGACTTTTAGGCTAAAGTCTGATCTGTGATCTCTCTCAAAAATAACACATTTAGTTCACTTCATGTTAGGTCAATAGAAATAGTTGATTATTGGTGAATGCTTTGAATTATCAGCTGTAGGACACAGAATACCTAGTGTTGCTGCTGGGGCCTGTCTCCTTGCCTCAATTTACAAAGCATCTCCCCGTGCTGTtctcctaccacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU548351 lncRNA upstream 9509 19237044 ~ 19237511 (+) True G482533
TU548350 lncRNA upstream 10891 19235871 ~ 19236129 (+) True G482532
TU548348 lncRNA upstream 15136 19231565 ~ 19231884 (+) True G482530
TU548346 lncRNA upstream 15662 19230134 ~ 19231358 (+) True G482529
TU548347 lncRNA upstream 16212 19229695 ~ 19230808 (+) False G482529
TU548359 lncRNA downstream 2036 19249272 ~ 19249472 (+) True G482541
TU548365 lncRNA downstream 8748 19255984 ~ 19256188 (+) True G482547
TU548366 lncRNA downstream 9349 19256585 ~ 19256841 (+) True G482548
TU548367 lncRNA downstream 9843 19257079 ~ 19257303 (+) True G482549
TU548410 lncRNA downstream 28133 19275369 ~ 19275654 (+) True G482590
XM_021605469.2 mRNA upstream 224100 18975768 ~ 19022920 (+) False LOC110525400
XM_036979539.1 mRNA upstream 224100 18975768 ~ 19022920 (+) False LOC110525400
XM_036979540.1 mRNA upstream 224100 18975768 ~ 19022920 (+) False LOC110525400
XM_036979541.1 mRNA upstream 224100 18979964 ~ 19022920 (+) True LOC110525400
XR_005052031.1 mRNA upstream 272727 18972352 ~ 18974293 (+) True LOC118964850
XM_021605474.2 mRNA downstream 48002 19295238 ~ 19304130 (+) False LOC110525403
XM_021605472.2 mRNA downstream 48042 19295278 ~ 19304130 (+) True LOC110525403
LOC110525111 mRNA downstream 100572 19347808 ~ 19349023 (+) True LOC110525111
XM_021605478.2 mRNA downstream 212795 19460031 ~ 19469464 (+) True LOC110525406
XM_021605483.2 mRNA downstream 256405 19503641 ~ 19521595 (+) False LOC110525411
TU547753 other upstream 388864 18857627 ~ 18858156 (+) True G482000
TU546804 other upstream 906454 18335332 ~ 18340566 (+) True G481159
TU546853 other upstream 956553 18290233 ~ 18290467 (+) True G481205
TU546849 other upstream 961708 18284797 ~ 18285312 (+) True G481201
TU546627 other upstream 1268621 17914760 ~ 17978399 (+) False LOC110525363
TU548369 other downstream 11913 19259149 ~ 19259608 (+) True G482551
TU549525 other downstream 1287273 20534509 ~ 20537098 (+) True LOC110525429
TU549560 other downstream 1353582 20600818 ~ 20603002 (+) False LOC110525431
TU549559 other downstream 1354089 20601325 ~ 20603002 (+) True LOC110525431
TU549652 other downstream 1555540 20802776 ~ 20803806 (+) True G483669

Expression Profile