RNA id: TU548410


Basic Information

Item Value
RNA id TU548410
length 286
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G482590
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 19275369 ~ 19275654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtggctcagttggtagagcatggcgcagggttgtgggtttgattcccacgggtgTCAcgtcctggccatagagaggcttttattctctattttggttaggccagggtgtgactagggtgggcattctagtttctttatttctatgttttctgtttctatgttttggccgggtatggttctcaatcaggtacagctgtctatcgttgtctctgattgggaatcatacttaggtagcctgtttttccaccttagttgtgggtagttgtctttgttagtagcctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU548367 lncRNA upstream 18066 19257079 ~ 19257303 (+) True G482549
TU548366 lncRNA upstream 18528 19256585 ~ 19256841 (+) True G482548
TU548365 lncRNA upstream 19181 19255984 ~ 19256188 (+) True G482547
TU548359 lncRNA upstream 25897 19249272 ~ 19249472 (+) True G482541
TU548358 lncRNA upstream 28133 19247020 ~ 19247236 (+) True G482540
TU548419 lncRNA downstream 5274 19280928 ~ 19281482 (+) True G482599
TU548424 lncRNA downstream 10683 19286337 ~ 19286980 (+) False G482603
TU548426 lncRNA downstream 11012 19286666 ~ 19286980 (+) False G482603
TU548425 lncRNA downstream 11049 19286703 ~ 19286980 (+) True G482603
TU548440 lncRNA downstream 39281 19314935 ~ 19322851 (+) True G482615
XM_021605469.2 mRNA upstream 252449 18975768 ~ 19022920 (+) False LOC110525400
XM_036979539.1 mRNA upstream 252449 18975768 ~ 19022920 (+) False LOC110525400
XM_036979540.1 mRNA upstream 252449 18975768 ~ 19022920 (+) False LOC110525400
XM_036979541.1 mRNA upstream 252449 18979964 ~ 19022920 (+) True LOC110525400
XR_005052031.1 mRNA upstream 301076 18972352 ~ 18974293 (+) True LOC118964850
XM_021605474.2 mRNA downstream 19584 19295238 ~ 19304130 (+) False LOC110525403
XM_021605472.2 mRNA downstream 19624 19295278 ~ 19304130 (+) True LOC110525403
LOC110525111 mRNA downstream 72154 19347808 ~ 19349023 (+) True LOC110525111
XM_021605478.2 mRNA downstream 184377 19460031 ~ 19469464 (+) True LOC110525406
XM_021605483.2 mRNA downstream 227987 19503641 ~ 19521595 (+) False LOC110525411
TU548369 other upstream 15761 19259149 ~ 19259608 (+) True G482551
TU547753 other upstream 417213 18857627 ~ 18858156 (+) True G482000
TU546804 other upstream 934803 18335332 ~ 18340566 (+) True G481159
TU546853 other upstream 984902 18290233 ~ 18290467 (+) True G481205
TU546849 other upstream 990057 18284797 ~ 18285312 (+) True G481201
TU549525 other downstream 1258855 20534509 ~ 20537098 (+) True LOC110525429
TU549560 other downstream 1325164 20600818 ~ 20603002 (+) False LOC110525431
TU549559 other downstream 1325671 20601325 ~ 20603002 (+) True LOC110525431
TU549652 other downstream 1527122 20802776 ~ 20803806 (+) True G483669
TU549738 other downstream 1683101 20958755 ~ 20963326 (+) True LOC110525116

Expression Profile