RNA id: TU549613


Basic Information

Item Value
RNA id TU549613
length 1425
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G483631
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20690848 ~ 20692359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctatgagactcaaaagagtccacctgtggtaaattcaattgaatggacatgatttggaaaggcacacacctgtctatataaaaaggtcccacagttgacagtacgtcagaggaaaaacaacaagctatgaagtcgaaggaattgtcagtagagctctgagacagaattgtgtcgaggcagagatctagggaagggtaccaaaaaatgtctgcagcattaaaggtccccaagaacacagtggcctccatcattcttaaatggaagaagtttggaaccaccaagacttcctaaagctggccgcccagccaaactgagcaatcagggaagaagggccttggtcagggaagtaaCCAAGAACCTGaatgtcactctgacagagctccagagttcctctgcggagatgggagaaccttccagaaggacaaccatctctgcagcactccaccaatcagagatccttgatgaaaacctgctccagagcgctcaggacctgactggggccaaggttcaccttccaacaggacaattaccctaagcacacagccaaccagtctctgaatgtctgtgagtggcccagccagagcccggacttgaatccgatctaacatctctggagagacctgaaaatagctgtgcagtgacgctccccatacaacctgacaaggcttgagaggatctgcagagaatgggagaaactccccaaatacaggtgtgccaagcttgtagtgtcatacccaagaagactcgaggctgtaatcactgccaatggtgcttcaacaaagtactgagtaaagggtctgaatacttatgtaaacgtgatttcatttttttttatatataatacaaagttttggctttgtcattattattccacaaaatgtggaagtcagggggtctgaatactttccgaatgcactgtatttctgaattTGCTATTAGGATAACTTTAGTCAAAAAAAATTGTCAATGATACAGTATAACATTGTCAAATGTAATACTATCTAAACAAATATTCAGCAATAACATACAGCCATCCACTTGCCTTATACATTGTATCCATATTGATATTATCTTGACCAGTTGCATTTAATGCTTTGTTGGCTGCATCTCTGCGATGATCCTTTGCAGGAGGCGGCAGCCAGTGATCGAAGTTGGTCTCTACTCTGAACCACCTATAGTAGGAAAGGACACTACACTTCATTTACACATTCAAGAGTAAACACCCCGATACATTTTGGCATCTTATTTTAAAAGCCCAATATCTGCTGATAGTATTATAAAACATTTGTTTATTATTGTATAATGAAAAGCAAATTAGTGCATAAAATAAAAGTtaatagaaaaaatatatacacagtggggcaaaaaagtatttagtcagccatcaattgtgcaagttctcccacttaaaaagatgagaggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU549575 lncRNA upstream 54273 20635375 ~ 20636575 (+) False G483596
TU549576 lncRNA upstream 54554 20635375 ~ 20636294 (+) True G483596
TU549530 lncRNA upstream 120485 20532076 ~ 20570363 (+) True G483556
TU549463 lncRNA upstream 191689 20495313 ~ 20499159 (+) True susd1
TU549458 lncRNA upstream 211618 20477857 ~ 20479230 (+) True yee9
TU549675 lncRNA downstream 194548 20886907 ~ 20889734 (+) True G483690
TU549712 lncRNA downstream 230807 20923166 ~ 20924220 (+) False G483721
TU549713 lncRNA downstream 230807 20923166 ~ 20926045 (+) True G483721
TU549765 lncRNA downstream 308219 21000578 ~ 21000911 (+) True G483767
TU549786 lncRNA downstream 332307 21024666 ~ 21025451 (+) False G483778
XM_021605546.2 mRNA upstream 8499 20679145 ~ 20682349 (+) False gsdf
XM_021605547.2 mRNA upstream 8499 20679145 ~ 20682349 (+) True gsdf
XM_021605537.2 mRNA upstream 45740 20624600 ~ 20645108 (+) False scarb2a
XM_021605536.2 mRNA upstream 45740 20624603 ~ 20645108 (+) False scarb2a
XM_021605538.2 mRNA upstream 45740 20624603 ~ 20645108 (+) True scarb2a
XM_036979573.1 mRNA downstream 7539 20699898 ~ 20710356 (+) False LOC110525440
XM_036979572.1 mRNA downstream 7556 20699915 ~ 20710651 (+) True LOC110525440
XM_021605541.2 mRNA downstream 38452 20730811 ~ 20733970 (+) True mrps30
XM_021605551.2 mRNA downstream 48067 20740426 ~ 20744978 (+) True LOC110525442
XM_021605557.2 mRNA downstream 63595 20755954 ~ 20779577 (+) False prlrb
TU549560 other upstream 87846 20600818 ~ 20603002 (+) False LOC110525431
TU549559 other upstream 87846 20601325 ~ 20603002 (+) True LOC110525431
TU549525 other upstream 153750 20534509 ~ 20537098 (+) True LOC110525429
TU548369 other upstream 1431240 19259149 ~ 19259608 (+) True G482551
TU547753 other upstream 1832692 18857627 ~ 18858156 (+) True G482000
TU549652 other downstream 110417 20802776 ~ 20803806 (+) True G483669
TU549738 other downstream 266396 20958755 ~ 20963326 (+) True LOC110525116
TU550839 other downstream 771780 21464139 ~ 21466905 (+) True G484674
TU550899 other downstream 861373 21553732 ~ 21554097 (+) True G484726
TU552088 other downstream 1748957 22441316 ~ 22444619 (+) True G485780

Expression Profile