RNA id: TU549778


Basic Information

Item Value
RNA id TU549778
length 601
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G483778
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21024666 ~ 21025677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTTCACATCAGTGTCGTAAATAAAAGTTCTTAGTCTTGTCACAATAGTCATATTTCTTATTGGGAAATCTCCATTAAAGTATTGATTATTAGATTTATACATTATCCCACCAATTAGGCTATCCAAAACGACTAACGATTATGTTAAACTAAACGTAATTTTATAGGCTGCAGTAGCCTACAAATGTGTAGCCTACATGAATTAACATTGAATCAATAATGCTTTAATTAGCCCTAAGCCTACATAACCTTTGGAGGAGCTGTTTGCCATATAGTAGCCTAAAAACGTTCAGAATTTGTTTCAGAAGAATTTGTTCAAATGACACAACTAGGCCTACAGTTTATTTTGAGTAGGCCTAGGGCCCAATCCCACGAAGAGAAGATTTCAACGTTTTCTGTTTTTCTTCTTCCTGCTTTCGATTGCCCTTACGCAACGATTGGTTTATTGTCGCTCCACTGGTGTGCTTTTTTTTGCGGCTCTTAGTGCTGCTTTATGATACATTCCTTAAGAATTATGCAAATTGTATCATTTACATTTAGTTTAACAACGAACCGTGGCCTTTTAAACATTATGCTTTGAAAACACCTTTACACGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU549765 lncRNA upstream 23940 21000578 ~ 21000911 (+) True G483767
TU549713 lncRNA upstream 98806 20923166 ~ 20926045 (+) True G483721
TU549712 lncRNA upstream 100631 20923166 ~ 20924220 (+) False G483721
TU549675 lncRNA upstream 135117 20886907 ~ 20889734 (+) True G483690
TU549613 lncRNA upstream 332492 20690848 ~ 20692359 (+) True G483631
TU549799 lncRNA downstream 2393 21027844 ~ 21028186 (+) True G483779
TU550621 lncRNA downstream 92101 21117552 ~ 21119475 (+) True G484479
TU550657 lncRNA downstream 115361 21140812 ~ 21141171 (+) True G484499
TU550658 lncRNA downstream 116776 21142227 ~ 21142621 (+) True G484500
TU550659 lncRNA downstream 118062 21143513 ~ 21147585 (+) False G484501
XM_021605577.2 mRNA upstream 5239 21014389 ~ 21019612 (+) False LOC110525453
XM_036979587.1 mRNA upstream 5239 21014389 ~ 21019612 (+) True LOC110525453
XM_021605576.2 mRNA upstream 10589 21010776 ~ 21014262 (+) True LOC110525452
XM_036980155.1 mRNA upstream 40233 20962300 ~ 20984618 (+) False LOC110525116
XM_036979584.1 mRNA upstream 77909 20940823 ~ 20946942 (+) True LOC110525115
XM_036979591.1 mRNA downstream 17581 21043032 ~ 21056547 (+) False cfap157
XM_036979589.1 mRNA downstream 17583 21043034 ~ 21056547 (+) False cfap157
XM_021605580.2 mRNA downstream 20887 21046338 ~ 21056547 (+) True cfap157
XM_036979592.1 mRNA downstream 36987 21062438 ~ 21098568 (+) False LOC110525457
XM_021605582.2 mRNA downstream 36990 21062441 ~ 21098568 (+) False LOC110525457
TU549738 other upstream 61525 20958755 ~ 20963326 (+) True LOC110525116
TU549652 other upstream 221045 20802776 ~ 20803806 (+) True G483669
TU549560 other upstream 421849 20600818 ~ 20603002 (+) False LOC110525431
TU549559 other upstream 421849 20601325 ~ 20603002 (+) True LOC110525431
TU549525 other upstream 487753 20534509 ~ 20537098 (+) True LOC110525429
TU550839 other downstream 438688 21464139 ~ 21466905 (+) True G484674
TU550899 other downstream 528281 21553732 ~ 21554097 (+) True G484726
TU552088 other downstream 1415865 22441316 ~ 22444619 (+) True G485780
TU552480 other downstream 1648791 22674242 ~ 22674452 (+) True G486127
TU552742 other downstream 2165181 23190632 ~ 23191917 (+) True LOC110525518

Expression Profile