RNA id: TU552480


Basic Information

Item Value
RNA id TU552480
length 211
RNA type TUCP
GC content 0.64
exon number 1
gene id G486127
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22674242 ~ 22674452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttgaatgctcccggtcgccctgccagtgcggcgaggtggaatagcctgcactgggctgtgctggcgaaccggggacaccatgcgtaaggctggtgccatgtatgccggcccaaggagacgcactggagaccagatgcgtagagccggcttcatggcacctggctcgatgcccactctagcccggccgatacgcggagctggtatgtacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552478 lncRNA upstream 2155 22671751 ~ 22672087 (+) True G486125
TU552439 lncRNA upstream 48372 22625464 ~ 22625870 (+) True LOC110525499
TU552414 lncRNA upstream 84281 22589758 ~ 22589961 (+) True G486069
TU552184 lncRNA upstream 153380 22520587 ~ 22520862 (+) True G485862
TU552121 lncRNA upstream 233202 22438886 ~ 22441040 (+) True G485806
TU552482 lncRNA downstream 4360 22678812 ~ 22679031 (+) True G486129
TU552464 lncRNA downstream 56538 22730990 ~ 22732203 (+) True G486111
TU552468 lncRNA downstream 57912 22732364 ~ 22732608 (+) True G486115
TU552494 lncRNA downstream 58248 22732700 ~ 22733291 (+) True G486141
TU552497 lncRNA downstream 59021 22733473 ~ 22733829 (+) False G486142
XM_036979629.1 mRNA upstream 17859 22646328 ~ 22656383 (+) False LOC110525503
XM_036979633.1 mRNA upstream 17859 22646328 ~ 22656383 (+) False LOC110525503
XM_036979628.1 mRNA upstream 17860 22646328 ~ 22656382 (+) False LOC110525503
XM_021605662.2 mRNA upstream 17860 22646351 ~ 22656382 (+) False LOC110525503
XM_036979630.1 mRNA upstream 17861 22646328 ~ 22656381 (+) False LOC110525503
XM_021605679.2 mRNA downstream 18348 22692800 ~ 22721327 (+) False LOC110525507
XM_021605678.2 mRNA downstream 24393 22698845 ~ 22721327 (+) False LOC110525507
XM_021605676.2 mRNA downstream 26590 22701042 ~ 22721327 (+) False LOC110525507
XM_021605674.2 mRNA downstream 30382 22704834 ~ 22721327 (+) True LOC110525507
XM_021605682.2 mRNA downstream 47182 22721634 ~ 22727163 (+) True LOC110525510
TU552088 other upstream 229623 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 1120145 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 1207337 21464139 ~ 21466905 (+) True G484674
TU549738 other upstream 1710916 20958755 ~ 20963326 (+) True LOC110525116
TU549652 other upstream 1870436 20802776 ~ 20803806 (+) True G483669
TU552742 other downstream 516180 23190632 ~ 23191917 (+) True LOC110525518
TU553562 other downstream 854288 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 978668 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 1237369 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 1905509 24579961 ~ 24586313 (+) True G488049

Expression Profile