RNA id: TU552919


Basic Information

Item Value
RNA id TU552919
length 362
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G486493
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23351371 ~ 23351732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caactttgttcacctctcctacaccaacaactttgttcacctctcctacagcaacaactttgttcacctctcctacagcaacaactttgttcacctctcctacagcaacaactttgttcacctctcctacagcaacaactttgttcacctctcctacagcaacaactttgttcacctctcctacaccaacaactttgttcacctctcctacagcaacaactttgttcacctctcctaaagcaacaactttgttcacctctcctacaccaacaactttgttcacctctcctacaccaacaactttgttcacctctcctacagcaacaactttgttcacctctcctacaccaacaactttgttc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552918 lncRNA upstream 194 23350697 ~ 23351177 (+) True G486492
TU552557 lncRNA upstream 38151 23307417 ~ 23313220 (+) True LOC110525581
TU552827 lncRNA upstream 90806 23251570 ~ 23260565 (+) False G486411
TU552829 lncRNA upstream 95870 23254872 ~ 23255501 (+) True G486411
TU552825 lncRNA upstream 98872 23251570 ~ 23252499 (+) False G486411
TU552923 lncRNA downstream 5135 23356867 ~ 23357387 (+) True G486497
TU552925 lncRNA downstream 12802 23364534 ~ 23364761 (+) True G486499
TU552931 lncRNA downstream 31820 23383552 ~ 23383766 (+) True G486504
TU552897 lncRNA downstream 39995 23391727 ~ 23392038 (+) True LOC110525161
TU552907 lncRNA downstream 41256 23392988 ~ 23393662 (+) True G486481
XM_036979664.1 mRNA upstream 18956 22832330 ~ 23332415 (+) True LOC110525522
XM_036979662.1 mRNA upstream 31250 23312041 ~ 23320121 (+) True LOC118964855
XM_036979663.1 mRNA upstream 38305 23312041 ~ 23313066 (+) False LOC118964855
XM_036979660.1 mRNA upstream 43080 23305581 ~ 23308291 (+) False LOC110525581
XM_021605696.2 mRNA upstream 125585 23198118 ~ 23225786 (+) False LOC110525520
XR_005052039.1 mRNA downstream 7345 23359077 ~ 23389892 (+) False LOC110525161
XM_036979665.1 mRNA downstream 7345 23359077 ~ 23392808 (+) False LOC110525161
XM_036979666.1 mRNA downstream 7345 23359077 ~ 23392808 (+) False LOC110525161
XR_002473769.2 mRNA downstream 209166 23560898 ~ 23570652 (+) True LOC110525542
XM_021605740.2 mRNA downstream 244480 23596212 ~ 23606381 (+) False asgrl1
TU552742 other upstream 159454 23190632 ~ 23191917 (+) True LOC110525518
TU552480 other upstream 676919 22674242 ~ 22674452 (+) True G486127
TU552088 other upstream 906752 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 1797274 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 1884466 21464139 ~ 21466905 (+) True G484674
TU553562 other downstream 177008 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 301388 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 560089 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 1228229 24579961 ~ 24586313 (+) True G488049
TU554735 other downstream 1279237 24630969 ~ 24631396 (+) True G488078

Expression Profile