RNA id: TU552925


Basic Information

Item Value
RNA id TU552925
length 228
lncRNA type intronic
GC content 0.44
exon number 1
gene id G486499
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23364534 ~ 23364761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTAAGTTGCAGTTGATTTAAAAGCAGCCTTGGTTAATATGAAATCGGTGTAGATGCTTATAGAGAGTATTGATCAGGCTTGCGTGATTCACTGCTGACGGATGCCAGGGAGACCTCCTGTGTAATAAAATGAATGAAGTCAGCCATGGTAATCTCTCTGTTACTAAGCAATGGCCTGCTTACACCACagctctgagtacacatcctcCTAGGGAACCCACACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552923 lncRNA upstream 7147 23356867 ~ 23357387 (+) True G486497
TU552919 lncRNA upstream 12802 23351371 ~ 23351732 (+) True G486493
TU552918 lncRNA upstream 13357 23350697 ~ 23351177 (+) True G486492
TU552557 lncRNA upstream 51314 23307417 ~ 23313220 (+) True LOC110525581
TU552827 lncRNA upstream 103969 23251570 ~ 23260565 (+) False G486411
TU552931 lncRNA downstream 18791 23383552 ~ 23383766 (+) True G486504
TU552897 lncRNA downstream 26966 23391727 ~ 23392038 (+) True LOC110525161
TU552907 lncRNA downstream 28227 23392988 ~ 23393662 (+) True G486481
TU552905 lncRNA downstream 29136 23393897 ~ 23394566 (+) True G486479
TU552899 lncRNA downstream 30203 23394964 ~ 23396253 (+) True G486473
XM_036979664.1 mRNA upstream 32119 22832330 ~ 23332415 (+) True LOC110525522
XM_036979662.1 mRNA upstream 44413 23312041 ~ 23320121 (+) True LOC118964855
XM_036979663.1 mRNA upstream 51468 23312041 ~ 23313066 (+) False LOC118964855
XM_036979660.1 mRNA upstream 56243 23305581 ~ 23308291 (+) False LOC110525581
XM_021605696.2 mRNA upstream 138748 23198118 ~ 23225786 (+) False LOC110525520
XR_002473769.2 mRNA downstream 196137 23560898 ~ 23570652 (+) True LOC110525542
XM_021605740.2 mRNA downstream 231451 23596212 ~ 23606381 (+) False asgrl1
XM_021605742.2 mRNA downstream 231451 23596212 ~ 23606381 (+) False asgrl1
XM_036979676.1 mRNA downstream 231451 23596212 ~ 23606381 (+) False asgrl1
XM_036979675.1 mRNA downstream 231919 23596680 ~ 23606381 (+) False asgrl1
TU552742 other upstream 172617 23190632 ~ 23191917 (+) True LOC110525518
TU552480 other upstream 690082 22674242 ~ 22674452 (+) True G486127
TU552088 other upstream 919915 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 1810437 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 1897629 21464139 ~ 21466905 (+) True G484674
TU553562 other downstream 163979 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 288359 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 547060 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 1215200 24579961 ~ 24586313 (+) True G488049
TU554735 other downstream 1266208 24630969 ~ 24631396 (+) True G488078

Expression Profile