RNA id: TU552905


Basic Information

Item Value
RNA id TU552905
length 670
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G486479
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23393897 ~ 23394566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcacagaagaaaactgttgtcctgatccgcaaaacaccagtctcaacgtcaatagtgaagagggatgctggccttctaggcagagttgcaaagaaaaagccatatctcagactggccaataaaaagaaaagattaagatgggcaaaagaacacagacactggacagaggatgaCCTCCTagtaggccagcatcccggagttgcctcttcactgttgatgttgagactggtgttttgcgactactatttaatgaagctgccagttgaggacttgtgaggcgtctgtttctcaaactagacactctaatgtacttgtcctcttgctcagttgtgccaccgggtcctcccactcctctttctattctggtttgaaccagtttgcgctgttctgtgaaggcagTAGTAcgcagcgttgtacgagatcttcagtttcttggcaatatctcgcatggaatagccttcatttctcagaacaagaatagactgatgagtttcagaagaaagttatttgtttctggccattatgagccagtaatcgaacccacaaatgctgacgctccagatactcaactagtctaaagaaggccagttttattgcttctttaatcgtAACAGTTTTcttctgtgctaacataattgcagaagtgttttctaatgatcggttagcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552907 lncRNA upstream 235 23392988 ~ 23393662 (+) True G486481
TU552897 lncRNA upstream 1859 23391727 ~ 23392038 (+) True LOC110525161
TU552931 lncRNA upstream 10131 23383552 ~ 23383766 (+) True G486504
TU552925 lncRNA upstream 29136 23364534 ~ 23364761 (+) True G486499
TU552923 lncRNA upstream 36510 23356867 ~ 23357387 (+) True G486497
TU552899 lncRNA downstream 398 23394964 ~ 23396253 (+) True G486473
TU552895 lncRNA downstream 1805 23396371 ~ 23396720 (+) True G486469
TU552894 lncRNA downstream 2472 23397038 ~ 23399157 (+) True G486468
TU552898 lncRNA downstream 16510 23411076 ~ 23411770 (+) True G486472
TU552945 lncRNA downstream 40734 23435300 ~ 23435975 (+) True G486518
XM_036979665.1 mRNA upstream 1089 23359077 ~ 23392808 (+) False LOC110525161
XM_036979666.1 mRNA upstream 1089 23359077 ~ 23392808 (+) False LOC110525161
XR_005052039.1 mRNA upstream 4005 23359077 ~ 23389892 (+) False LOC110525161
XM_036979662.1 mRNA upstream 73776 23312041 ~ 23320121 (+) True LOC118964855
XM_036979663.1 mRNA upstream 80831 23312041 ~ 23313066 (+) False LOC118964855
XR_002473769.2 mRNA downstream 166332 23560898 ~ 23570652 (+) True LOC110525542
XM_021605740.2 mRNA downstream 201646 23596212 ~ 23606381 (+) False asgrl1
XM_021605742.2 mRNA downstream 201646 23596212 ~ 23606381 (+) False asgrl1
XM_036979676.1 mRNA downstream 201646 23596212 ~ 23606381 (+) False asgrl1
XM_036979675.1 mRNA downstream 202114 23596680 ~ 23606381 (+) False asgrl1
TU552742 other upstream 201980 23190632 ~ 23191917 (+) True LOC110525518
TU552480 other upstream 719445 22674242 ~ 22674452 (+) True G486127
TU552088 other upstream 949278 22441316 ~ 22444619 (+) True G485780
TU550899 other upstream 1839800 21553732 ~ 21554097 (+) True G484726
TU550839 other upstream 1926992 21464139 ~ 21466905 (+) True G484674
TU553562 other downstream 134174 23528740 ~ 23531799 (+) True G487078
TU553637 other downstream 258554 23653120 ~ 23667927 (+) False G487146
TU553786 other downstream 517255 23911821 ~ 23914250 (+) True LOC110525563
TU554703 other downstream 1185395 24579961 ~ 24586313 (+) True G488049
TU554735 other downstream 1236403 24630969 ~ 24631396 (+) True G488078

Expression Profile