RNA id: TU553988



Basic Information


Item Value
RNA id TU553988
length 243
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G487458
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24236099 ~ 24236341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgttcttcgggaccttaaatgctgtagacattttttggtaccctttcccagatctgtgccttgacaaaatcctgtctctgagcgctatggacaattcctggcttgggttttgctctgacatgcactgtcaactgtgggaccttttatagacaggtgtgtgcctttccaaatcatgtccaatcaattgaatttaccacaggtggactcctatcaagttgtagaaatatctcaaggatgatcaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU553986 lncRNA upstream 6971 24228913 ~ 24229128 (+) True G487456
TU553985 lncRNA upstream 9517 24226263 ~ 24226582 (+) True G487455
TU553983 lncRNA upstream 11140 24224645 ~ 24224959 (+) True G487453
TU553892 lncRNA upstream 26824 24207024 ~ 24209275 (+) True G487372
TU553972 lncRNA upstream 32019 24203865 ~ 24204080 (+) True G487442
TU553989 lncRNA downstream 1430 24237771 ~ 24238005 (+) True G487459
TU553991 lncRNA downstream 4441 24240782 ~ 24241082 (+) True G487461
TU553996 lncRNA downstream 10565 24246906 ~ 24247127 (+) True G487465
TU554569 lncRNA downstream 156735 24393076 ~ 24395465 (+) True G487922
TU554629 lncRNA downstream 240763 24477104 ~ 24478371 (+) True G487982
XM_021605789.2 mRNA upstream 113500 24080291 ~ 24122599 (+) True LOC110525573
XM_021605786.2 mRNA upstream 189897 24042520 ~ 24046202 (+) True LOC110525569
XM_021605787.2 mRNA upstream 193740 24042029 ~ 24042359 (+) True LOC110525570
XM_036981737.1 mRNA upstream 294221 23925846 ~ 23941878 (+) False LOC110525298
XM_021605779.2 mRNA upstream 321802 23911741 ~ 23914297 (+) False LOC110525563
XM_021605799.2 mRNA downstream 65395 24301736 ~ 24314535 (+) False rflna
XM_036979697.1 mRNA downstream 65396 24301737 ~ 24314535 (+) True rflna
XM_021605817.2 mRNA downstream 480005 24716346 ~ 24724878 (+) True stx2b
XM_036979714.1 mRNA downstream 497491 24733832 ~ 24870244 (+) False LOC110525587
XM_036979713.1 mRNA downstream 497491 24733832 ~ 24870247 (+) False LOC110525587
TU553786 other upstream 321849 23911821 ~ 23914250 (+) True LOC110525563
TU553637 other upstream 568172 23653120 ~ 23667927 (+) False G487146
TU553562 other upstream 704300 23528740 ~ 23531799 (+) True G487078
TU552742 other upstream 1044182 23190632 ~ 23191917 (+) True LOC110525518
TU552480 other upstream 1561647 22674242 ~ 22674452 (+) True G486127
TU554703 other downstream 343620 24579961 ~ 24586313 (+) True G488049
TU554735 other downstream 394628 24630969 ~ 24631396 (+) True G488078
TU554945 other downstream 702428 24938769 ~ 24939272 (+) True G488258
TU556227 other downstream 1402520 25638861 ~ 25639692 (+) True si:dkey-191c17.2
TU556254 other downstream 1447345 25683686 ~ 25684311 (+) True G489447

Expression Profile