RNA id: TU559979


Basic Information

Item Value
RNA id TU559979
length 220
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G492827
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28542610 ~ 28542829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAACATGGTTTAATGTGATATTCTATGATACTGGTGATCAACTTCAAGGTTTATCACATCATCAGTAGGCCTGTACTGATCTCTGCTGGATTCCTTTAAATATTGCAATTggcagacaaaaaaaatctacattttggAGCGCTTGGAGTTGTGTGAACGCACATCACATTCAGTTGCATAGCCAACTTTTAATGTACAAAAATCGGATATTGGAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559976 lncRNA upstream 2590 28539809 ~ 28540020 (+) True G492824
TU559932 lncRNA upstream 57395 28484933 ~ 28485215 (+) True G492784
TU559931 lncRNA upstream 57878 28484459 ~ 28484732 (+) True G492783
TU559874 lncRNA upstream 109333 28430062 ~ 28433277 (+) True G492728
TU559893 lncRNA upstream 131973 28410362 ~ 28410637 (+) True G492745
TU559940 lncRNA downstream 14010 28556839 ~ 28563758 (+) True LOC110525677
TU559987 lncRNA downstream 21502 28564331 ~ 28565127 (+) True G492835
TU559968 lncRNA downstream 28523 28571352 ~ 28573832 (+) False G492818
TU559970 lncRNA downstream 28523 28571352 ~ 28573832 (+) True G492818
TU559941 lncRNA downstream 36504 28579333 ~ 28581308 (+) True G492791
XM_036979779.1 mRNA upstream 7025 28488558 ~ 28535585 (+) True LOC110526333
XM_036979780.1 mRNA upstream 7457 28488558 ~ 28535153 (+) False LOC110526333
XM_036979781.1 mRNA upstream 7801 28487813 ~ 28534809 (+) False LOC110526333
XM_021606006.2 mRNA upstream 142287 28392387 ~ 28400323 (+) False LOC110525670
XM_036979782.1 mRNA downstream 192 28543021 ~ 28552161 (+) False tgoln2
XM_036979783.1 mRNA downstream 192 28543021 ~ 28552161 (+) False tgoln2
XM_036979784.1 mRNA downstream 192 28543021 ~ 28552161 (+) False tgoln2
XM_036979785.1 mRNA downstream 192 28543021 ~ 28552161 (+) True tgoln2
XR_002473808.2 mRNA downstream 13976 28556805 ~ 28563324 (+) False LOC110525677
TU559864 other upstream 169418 28371722 ~ 28373192 (+) True LOC110525669
TU558838 other upstream 751040 27779630 ~ 27791570 (+) False LOC110525650
TU558726 other upstream 999615 27488596 ~ 27542995 (+) False LOC110525642
TU558727 other upstream 999615 27536902 ~ 27542995 (+) True LOC110525642
TU556254 other upstream 2858299 25683686 ~ 25684311 (+) True G489447
TU560642 other downstream 446601 28989430 ~ 28990734 (+) True G493450
TU561220 other downstream 1329183 29872012 ~ 29880649 (+) True LOC110525701
TU561339 other downstream 1541755 30084584 ~ 30129769 (+) True G494065
TU562324 other downstream 1779193 30322022 ~ 30344847 (+) True G494946
TU562321 other downstream 1893133 30435962 ~ 30436685 (+) True G494943

Expression Profile