RNA id: TU560273


Basic Information

Item Value
RNA id TU560273
length 215
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G493094
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28633494 ~ 28633708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccactctgccctttctcacctggacaaagggaacacctatgtaagaatgctgttcattgactacagctcagcgttcaacaccatagtgcccatgaagctcatcactaagctatgtactgctctgcatctgactgtaaggcgctacagagggtagtgcgaacggcccagtacatcactggggccaagcttcctgccatccaggacctatataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560265 lncRNA downstream 10166 28623052 ~ 28623328 (-) True G493086
TU560261 lncRNA downstream 14770 28618509 ~ 28618724 (-) True G493082
TU560247 lncRNA downstream 44914 28588378 ~ 28588580 (-) True G493068
TU560243 lncRNA downstream 57758 28575416 ~ 28575736 (-) True G493064
TU560242 lncRNA downstream 58139 28575073 ~ 28575355 (-) True G493063
TU560274 lncRNA upstream 346 28634054 ~ 28634311 (-) True G493095
TU560275 lncRNA upstream 5835 28639543 ~ 28639799 (-) True G493096
TU560277 lncRNA upstream 6513 28640221 ~ 28640580 (-) True G493098
TU560278 lncRNA upstream 9646 28643354 ~ 28643652 (-) True G493099
TU560279 lncRNA upstream 11793 28645501 ~ 28645773 (-) True G493100
XM_036979786.1 mRNA downstream 77481 28552264 ~ 28556013 (-) True zgc:153044
XM_021606020.2 mRNA downstream 77901 28552264 ~ 28555593 (-) False zgc:153044
XM_036979787.1 mRNA downstream 79103 28552264 ~ 28554391 (-) False zgc:153044
XM_036979778.1 mRNA downstream 165629 28455590 ~ 28467865 (-) True ube2d4
XM_021606018.2 mRNA downstream 165689 28455590 ~ 28467805 (-) False ube2d4
XM_021606021.2 mRNA upstream 355699 28989407 ~ 29010716 (-) False LOC110525678
XM_036979788.1 mRNA upstream 355699 28989407 ~ 29010716 (-) False LOC110525678
XM_021606022.2 mRNA upstream 389500 29023208 ~ 29070012 (-) False LOC110525679
XM_021606024.2 mRNA upstream 389500 29023208 ~ 29070012 (-) True LOC110525679
XM_036979791.1 mRNA upstream 437008 29070716 ~ 29269113 (-) False LOC110526490
TU559292 other downstream 798192 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 896516 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1389301 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1766336 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 2081867 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 777507 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 844947 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 868545 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1041615 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1892978 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile