RNA id: TU560611


Basic Information

Item Value
RNA id TU560611
length 274
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G493419
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28948864 ~ 28949137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actataaatacctaggtgtcaggcttgactgtaaactctcttttcagactcatattaagcatctccaatccaaaattcaatctagaatcggcttcctatttcgcaacaaagcctctttcactcatgctgccaaacataccctcgactaaactgactatcctgccgatccttgacttcggcgatgtcatttataaattagcctccaaaactctactcagcaatttggatgcagtctatcacagtgcatccgttttgtcaccaaagccccatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560603 lncRNA downstream 10386 28938251 ~ 28938478 (-) True G493411
TU560498 lncRNA downstream 115321 28833311 ~ 28833543 (-) True G493313
TU560485 lncRNA downstream 124272 28824375 ~ 28824592 (-) True G493300
TU560444 lncRNA downstream 157367 28791177 ~ 28791497 (-) True G493259
TU560436 lncRNA downstream 164735 28783876 ~ 28784129 (-) True G493251
TU561400 lncRNA upstream 21769 28970906 ~ 28971211 (-) True G494122
TU561408 lncRNA upstream 36574 28985711 ~ 28985927 (-) True G494130
TU561396 lncRNA upstream 40273 28989410 ~ 28990733 (-) False LOC110525678
TU561397 lncRNA upstream 40413 28989550 ~ 28990733 (-) True LOC110525678
TU561432 lncRNA upstream 91274 29040411 ~ 29040803 (-) True G494154
XM_036979786.1 mRNA downstream 392851 28552264 ~ 28556013 (-) True zgc:153044
XM_021606020.2 mRNA downstream 393271 28552264 ~ 28555593 (-) False zgc:153044
XM_036979787.1 mRNA downstream 394473 28552264 ~ 28554391 (-) False zgc:153044
XM_036979778.1 mRNA downstream 480999 28455590 ~ 28467865 (-) True ube2d4
XM_021606018.2 mRNA downstream 481059 28455590 ~ 28467805 (-) False ube2d4
XM_021606021.2 mRNA upstream 40270 28989407 ~ 29010716 (-) False LOC110525678
XM_036979788.1 mRNA upstream 40270 28989407 ~ 29010716 (-) False LOC110525678
XM_021606022.2 mRNA upstream 74071 29023208 ~ 29070012 (-) False LOC110525679
XM_021606024.2 mRNA upstream 74071 29023208 ~ 29070012 (-) True LOC110525679
XM_036979791.1 mRNA upstream 121579 29070716 ~ 29269113 (-) False LOC110526490
TU559292 other downstream 1113562 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1211886 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1704671 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 2081706 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 2397237 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 462078 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 529518 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 553116 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 726186 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1577549 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile