RNA id: TU561487


Basic Information

Item Value
RNA id TU561487
length 220
lncRNA type intronic
GC content 0.40
exon number 1
gene id G494208
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29157393 ~ 29157612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATAATGCTTCTGACCACTGTGCCGGCCATTATGACTTTCCACTTActctactgtatgtttgtgaCCAAAGTCCCTGTTTTCTGCAAGCTTTCCTATATTTTCAAATGATTACTGCTCTTAAAAGATGGAAAATCTTGAAGGGAATGATGGTATAATTGTCTTTGGATgtactgtgtggttgtgttagagaggggcagagaaatggaaggaaaCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561484 lncRNA downstream 7437 29149739 ~ 29149956 (-) True G494205
TU561427 lncRNA downstream 85758 29071147 ~ 29071635 (-) True LOC110526490
TU561432 lncRNA downstream 116590 29040411 ~ 29040803 (-) True G494154
TU561396 lncRNA downstream 166660 28989410 ~ 28990733 (-) False LOC110525678
TU561397 lncRNA downstream 166660 28989550 ~ 28990733 (-) True LOC110525678
TU561492 lncRNA upstream 6995 29164607 ~ 29164809 (-) True G494212
TU561508 lncRNA upstream 40248 29197860 ~ 29198198 (-) True G494228
TU561511 lncRNA upstream 42728 29200340 ~ 29200566 (-) True G494231
TU561582 lncRNA upstream 120079 29277691 ~ 29277911 (-) True G494285
TU561585 lncRNA upstream 122112 29279724 ~ 29279927 (-) True G494288
XM_021606022.2 mRNA downstream 87381 29023208 ~ 29070012 (-) False LOC110525679
XM_021606024.2 mRNA downstream 87381 29023208 ~ 29070012 (-) True LOC110525679
XM_021606021.2 mRNA downstream 146677 28989407 ~ 29010716 (-) False LOC110525678
XM_036979788.1 mRNA downstream 146677 28989407 ~ 29010716 (-) False LOC110525678
XM_036979786.1 mRNA downstream 601380 28552264 ~ 28556013 (-) True zgc:153044
XM_036979793.1 mRNA upstream 253592 29411204 ~ 29483533 (-) False LOC110525681
XM_036979794.1 mRNA upstream 253592 29411204 ~ 29483533 (-) False LOC110525681
XM_036979795.1 mRNA upstream 253592 29411204 ~ 29483533 (-) False LOC110525681
XM_036979796.1 mRNA upstream 253592 29411204 ~ 29483533 (-) False LOC110525681
XR_005052053.1 mRNA upstream 253592 29411204 ~ 29483533 (-) False LOC110525681
TU559292 other downstream 1322091 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1420415 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1913200 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 2290235 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 2605766 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 253603 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 321043 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 344641 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 517711 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1369074 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile