RNA id: TU562004


Basic Information

Item Value
RNA id TU562004
length 5377
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G494672
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29962791 ~ 29968300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTCTTCATACTTACTTTATACACTGTACATGGAAACACAAAGAATGGGTAAAATAACTGTCTAAAACTTCAGAGTAATACAAAGTATgttgatactgtatatagccaagatATTGGGACATTTTTACAGCCAGGTAAGGTCATTTTGATGGGATCAAATTCAGTCAGCATTGCCATTTCAATAAGCGTGAGATGAAACATTTTTTAAGTGCAGAGTGGAGGCTTGATATGATACGGGTGCAAGTAGTTTTATTTGTAATATATTCCTATGTACATTTATACTATTTCCCTGTCGATACAACCAACCAGACATAAAAGTCATACCAACGTCTCATTGGTAAAAAATGGTCATTTTCAGTGACCATACAGCAAATTCTACTGGAGGATTATTCCAGAGGCATGAGTCAGAACAGGGAAACAGCAAATTTAAGGCAAAAAGGGAAATGTACTGTAAGGCCTGTGGTAATATCTGGATTTGCCAGTAGGATAACTATGGGGATTGTTTTTGTGTAGAGGTGTCTTGAGTTTAACTGATGATTGACACCTGGAGAATGTAAAGGTAGATCTGTGCAATGTCCAGTTGACTGATACAGTATCTCTGGAGCAGGATGATGCTTTAAAGAGCAGCCATGTAATAATTGTTAGAAGGGTGCATGTTTTCTTTTAGCTGGATGTGCTAAACTGTCTTATCCAATTTCACTGTCAGGATGCACAGAAGGACTCAGTGTTATCTACAGAGAAATCCATGTGGGTTGCCCTTAGAGTTATGTGCTACTTAAAGAAAAGGTAACCATATCATATGAACAGAGACTTGAAGCATAATGCAGTATCAGTTAAAACTGCATTCCTTTACCACACAAGCCCCTCCAGCTCAACTGACTGCATATTTACCATGCCTGTTGCATGTTTGTGTATTTGGGGCAATGCTTTCAGAGTCCCCCTGGAATGTGCCTATAGTCGGAAATTGAACAGGAATAGCATGATCTCATATATGTATGAGATTAATTGGTGGTTATCTAAGGATTCTAGAACATTGGGTTCACAATAGCCTCGTTCAAACCTTGTGCTAACATGCAAGTTTTATGATTTGATCAATATGATCCAATCACTATCTGATCAAGGTTTGTCGCTTCTAGATATTGTATTACAATGAGGGAGTTCTGTTAACCTGAGCTTCGGTGCACTGGTCTATGGCTCGTGAACGGGCAAAAGCGATGAGGGAGGAGCGCCCTTCTAAAAATTGAACAGTAATCTGCGCAGCTCGGCCATGTTTTCAACAAGGAAGCATGCTGTATCATCCAGAAACATACAGCTCTTTTTCCTAAAATATATGTTAAACTTTtcaaactagttttcattgggaaggcaaTCACATTCAcaaagcaatcacttttgcatgcaaaaacacagaatcctactcattacttcACGTGCCTTATCTAGCCTAGGCTACATCACTTCTGTTTTGAGCAGACTGCAAACTCCTCCCACTGGGGGTAAACCTGGCCAAATAATTGAATCCCATcaatggctgcatttacacaggcagccaaaGTGCCTCATCCTGCCACTGTGTTCGCATTGTGAACAGATTAGCAGGTGCCTCCCAGTATGCAAAATATTTGACTGCTATTCTttcaaaaatatttatttatttattttaagacaattaCTGATGCCATAAATCAACCGTGATACCTGTCAATAATTTGAGGCCGTTATTACGATGATTTGACCATCCAGATCTGTTTACCCTTGATTGATATTCAGACACAATGTGTGCTTAATTACCTACGGAGGTGATCAGGAAGGTCTGATGACAATCAGAATGTgaacaagatcaggacaaagtgTGAACGTTAGTGCCAGGTTGGCTGTGTTCGCACAGGCAGCCCACTTCTGATCTTTTTTACaatttggtcttttgaccaattagATCAGCTCTATTTCCCTTAATTGTCCAAAAGATCAGAATGAGTCTGCCTGTGTAAATACAGCAGTTTAAATAGGGCTATAGACAGTCTGGTGCCTCATTCATTCCCTACCAGAGCAATCTGTTTAGATTGAGACGACCCCACTTCACCATGATGGTCCTCCCTCCCCATATATCCCTCACACAGTCTTCCTTATTTTCCCAGGATCACATAAGCAATGTAATAACAGTTCAACCAAGATGCCATTTGTCGAAACAATTTTCTATGATCATGTTTATACCCGTATGTCTCAAATCACACGGCACCAAGACATTCTGTTTCTCTACTTCTGCATGTGCCTGCTTAACTGATTGTCGATGCATTGTGGAATTCTTTCTCTATGGTGGATCTGCTGCTGTGGCATGCGTGTGGGTAATATTGAACCTTTTCACTAACATTTCAATTCTCATTGGTCGATTACTGTTATAGTTCTACACAGGTTTGAAACAAGGTAGTACAAATCATTTGAATGATAAACTGACGGTCAATCATCTTAAATTATTAATCAACATTATTGAACAAATCTGAACTCTGTGTTCCTACTTTCCAAAGCATATTCTTTACATTATCTACAAACTGTTCATCGGAGGCTTCAACAAATGACTTCCAATTGAACCTAAATAGTATCGTCTATGTGCATAATCATTCAGTGCCTTATTTACAGCTTAGGAAGTGATTGTATTTCATATTTTCTAAATACATGGTActgtgctttcggaaagtattcagaccccttgactttttacacattgttacgttacagcctttttctcaAATTGATTCAATGGTTGTTTTcccgtcatcaatctacacacatattccgtaatgacaaaggaaaaacaggttgtgtgcaaataaaaaaaacaaatataaaatgtaaattttttacaagtattcagaccctttactcagtactttgttaaagcacctttggcagtgattacagcctcgagtcttcttgggtatggcactacacgcttggcacacctgtatttggggagtttctcccattcttctctgcagatcctctcaagctctgtcaggttggatggggagcatcgctgcacagctattttcaggtctctcctgttggaaggtgaaccttcacccgaatctgaggtcctgagcgctctggagcaggttttcatcaagaatctctctgtactttgctccgttcagctttctctcaatcctgactagtctcccagtccctgccgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcaccgtagggatggtgccaggattcctccagatgtgacctttggcattcaggccaaagagttcaatattggtttcatcagaccagggaatcttgtttctcatggtctaagagtcctttaggtgccttttgtcaaactacAAACAGGCTGTCCTGTGCTTTTTACTGGCTTCCGTTgcactgtgggaacttatatatgtgcctttccaaatcatgtccaatcaattgaatttacaggtgggctccaatcaagttgtagaaacatctcaaggataagcaatggaaaaaggatgcacctgagctgacagcaaagggtctgaatacttatgtcctttacattttttacatttgcaaacatttctaaaaacctgttttcactttgtcattatggtgtgtgtagattgatccattttagattaacaaaatgtggcaaaagtcaaggggtctgaatagtttccgaatgcactgtaataatAGCAGATAATGCAAATCACAAGACTTGTATTAATGTATCAGTCAATCTGGTAGAAATACAATACTGTGCAAGGCAAATACCTCTGCTGTGTATTGGCTGCTGCGAATGATTGCTTGAGAAAACAACCTAGAAAATGAAACACTATGTAGTTAACAGAACTAAAACACTTAAGTTcacaaaaaaagtatatatacatttatatctatcaaaaaataattaaaaagtgTATCCTGATTGTGAATCTCCTCCGTGTGAAGAGGATACTAGATAATGGCCCCTTGGTAGACCTGACCCCAGCTCAACAAACAATATTATAGACAAGCCTTGATCATCTTCAACTATACAATCAATCATCCCAAACGAGGACCACAGAGCAGTTTCAGCCTGTCTCAAAGGACATCTTGGATTCAGCTTATCCCTTCACATATAGTATACAATTTCATACGGCCTACTTTGGCACATCACCTTACAGTAATACAAGTTTGCCCTGAAAGTGATATCTATAAATATACCTGTTGTGTAGGTAATGATTGCAGTGGCCTATAGCTAATGTAACATTCTGTATGATAGCACAGACAATAATTGGGTTCTCAACTGTAACCAAAGAGCAATTGGTACACAAACCTGGAAGTATTGCAGTATCTGAAGAAATGCCATGATTCTATATTGGCTGTATTTGTGTGGTTCTGGGAGACTGTAGACTGCCATGGTGCAAGGAGGATAAAACACACCTGTATAGCCCAGGGTGGAAGATGGGGAACATTGATCTATCAGGACTTAACCCAAACCTGCAGCATGGGGGCGCTGAATTACCAGAGAATGGAACCAGCTCCACTCTGAAGCCCCAGTCCAGGACACACACTATGTATTGGTATTACAGACATTGATAAATAAACACTAAAACAATATGCAACTTTTTCTTTAGCAACTTTTGCTATTGTTGGCCAATGGTTTGTGTGTTGTGCATGCATGTTCCTTGCTTAAATAAGATGCTTCTTAAAAGGCTTTTCTCCATTGTATCACTGTCTGAAGTAAAAAGAGCCTCTGACCGTATATTTTTGTTGATTCAGATGGTGTCGCTTTACAAAGACTGGTTCGTAGCACCTAAGGTTTTCAATGCTGTATTCTCTCATTCTACTTCCTGTCTATATATAGAGCCTTGAAAGCCTACTTTAAGCAATACTCCCATCTTGAAATTACTTGTCATCtcaatttattttattattttgcaGCCTTTCCCTCCTTTCTCATTTTCATCCTCTTCTCTAACTTTACACACTCTCCTTATCCTCCCTCTCTTATCTACCTCTCCAACCCTACTTTGGGTTGAAAATCCCAGGTTCCAGCTTTGTGCTGCCACTGCGGCCCCAGCAGCCTGCTGCCATGCTCATGCTGCGCTGGGCTGGTCCCGGGCCGtgctggctgtggctgtggctgtctgactggctctGTGTGCGCTCTGGTCTGCTGTGGCCGCTGCCGGTGGACGAGCTGGGGGCCGGCTGGGCGGAAATGGTGCGCAGCAGGTGGTTCCGCTTCCGCAGAAAGTCGCTTTTTGCACCCAGACCAAAGCTGCCTTTCCGTAGGACCATGCGGGCACTGCTGGTCTTTGGTGGCCGGGAGCGCTGGTTGTACTCCAGCTGAGAGAGGTGGGTCGCATAGCCCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562038 lncRNA downstream 1430 29960983 ~ 29961361 (-) True G494703
TU562037 lncRNA downstream 2065 29960144 ~ 29960726 (-) True G494702
TU562036 lncRNA downstream 2970 29959613 ~ 29959821 (-) True G494701
TU562032 lncRNA downstream 3515 29958981 ~ 29959276 (-) True G494700
TU562011 lncRNA downstream 4587 29956552 ~ 29958204 (-) True G494679
TU562003 lncRNA upstream 6186 29974486 ~ 29980710 (-) True G494671
TU562047 lncRNA upstream 23587 29991887 ~ 29992155 (-) True G494712
TU562107 lncRNA upstream 134591 30102891 ~ 30105660 (-) False LOC110525706
TU562108 lncRNA upstream 134591 30102891 ~ 30141156 (-) True LOC110525706
TU562142 lncRNA upstream 195724 30164024 ~ 30164528 (-) True G494787
XM_021606065.2 mRNA downstream 92384 29863198 ~ 29870407 (-) False kmt5ab
XM_021606064.2 mRNA downstream 92401 29863228 ~ 29870390 (-) True kmt5ab
XR_005052406.1 mRNA downstream 151008 29798509 ~ 29811783 (-) False LOC118965073
XM_021606061.2 mRNA downstream 175863 29769924 ~ 29786928 (-) True LOC110525697
XM_021606060.2 mRNA downstream 175890 29769924 ~ 29786901 (-) False LOC110525697
XR_005052057.1 mRNA upstream 1767 29970067 ~ 29974882 (-) True LOC118964857
XM_021606074.2 mRNA upstream 7858 29976158 ~ 29980778 (-) True LOC110525703
XM_036981739.1 mRNA upstream 137065 30105365 ~ 30107695 (-) False LOC110525706
XM_021606082.2 mRNA upstream 221272 30189572 ~ 30191815 (-) True LOC110525709
XM_036979817.1 mRNA upstream 231294 30199594 ~ 30209590 (-) True sftpbb
TU561865 other downstream 287218 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 459400 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 479445 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 547477 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 2127489 27827231 ~ 27835302 (-) False LOC110525655
TU562998 other upstream 558386 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 577102 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 606818 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1693093 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1702678 31670978 ~ 31671927 (-) True G496777

Expression Profile