RNA id: TU562960


Basic Information

Item Value
RNA id TU562960
length 2282
lncRNA type read_through
GC content 0.44
exon number 3
gene id G495502
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30501931 ~ 30518414 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTGCTGAACAGAGTTCCCCCGGGAGTAGTGGAGTAGTCGTTGGGCATGTGCGAGGCGTCGTTTATGGTCACCCGCCTGGTCGGAATGGCCTTGCTAGTAGTGGTCTTCTGACAGCCCGTAGACATCTTCAAAACACAGGGGCGTTTGCTAATAACTACAAATTGGACAACTTAACTAAATATCTTGGACCTGAAAAACAACAAAGCAAACAACGTGCCCTGTTGCTGCTTCCTCAATTATTTGCTTTGGGTCGTTAGCAAGCTAATtcctaaataaaaacaaatactttattTTGTCATAAGTGCAAATAATGTTGAATATCTAAACTAACCACACAcacacacacacatacacatattaagACCTACTCTTTCGACCAATGTTATTGCTTTCCTTTAAACAAACACCAGACAATACATTTCTGATGGGAAAAGGGGTAGGGGTGTACAGACATCAGGAGAGGgttgagaggaaaggagacaggTTTGTGGTGGGGTTGTGTGGGCTCACAGTTGTGGGTCAGTATTACAGTTTCTTATCACAGTGATTGGTGGCTGGTTGTCTTCGCTAGTCTACTGAGAGTTGCCAACAAAACAAGCAACACTTACAATCCCAACACTTTCAAATCTCTGTAGATAcccacctctccctgactgactaTCACATGTAACCAGCTTAACCAGTGCTACATTATTACCTGTAGTGGTGAAGTTACTTCTTTACCCTTATCGAATGATGGGTAGATGCTGAGATGATCTGTAAACCCTCTTGGATATATCCTGTGATATCAGACTGACAATCTGACAATTGCTGTGTGACAGACACACCAGAGGGGAGATGCTACATTAATTAGGGGGACTCTGACCCCTGCTGGTAATGAACAGAACTGCTACATAATATCCATATTGAGAGGGATAGAACAGGACTGCTGCATCTACACCGAAAGGCtgggggagtggagggaggcagggcagggcagggtgtGCAGTGCAGGGAGAATGGGGTGTGAGGATGGGGTGTAGAGATGACTGAGGTGGGTGGGCTGCATACATACATGCAGATGGTGGTGACAGGACCGCCAGACAAACTGGACTATAGCTGCACACATATAGCAGGGTAGGTGAAAGGTCTATCCAACGTTCTCATGATTGCCCCAGCCTTTACTCCAATTACATTCACCCTGGAAACACACAAACCACTCCAGGGAGGTTGGTTGTGGGGTTGGGGAGGAAAGTCAACACAGAACCTCCTTTTTCTAAAACACAAAGAACCGTGAAATGTCTCTGAAGCCAGTAATGCCCTCTAGGTGAGATGACGACAGCAAAGGGAGGCATCACATGAAaatcacaaaataacaaataaCCGGACACACAAAAATGGACAGATAAAACAGGCAGAACGACACAgaggtttgttttgtttgttctcaTACCCACCAGATCTCAAGATATATAGAACATATACGCATAGAGTTAACCAAACAAGAACACCAGAGCAGAAGAATCGTTTAGGTGTCTGAAACAGCAGCATCATTAGCATCACATAGGGTTATGGTGAAATTAAACACAGGTAACACTCAGTCACGTAGCATTTCAGTGCAGATAGAATGTACAACACCAATATCCCAAATGTAGGCTACTGGAGTGGGACAGTGAAGGGCTGAAACCAGCCTGTGATGTATTTAATCTTTTTTTTGCTGGAAGAGTctgttcagtgtgacagggagggagagtgacCTGTTGCCTAGAGATAATTCTGAGTATTTTGACAGTCTCCCTTTTCAGAAGTTTCACAAACAAACACTGCCCTGTTTCTTTAGAAAGGGGACGTATGACATAATCACCTTGCCCTAAACCCCAACATGGCCTCCTATCCAATACaggagtgaccccccccccccccccccccccacaaccccTAGTACTGTAGTGAAAGACAGGCCATGCGCCAGCAGTCATTCATGCTGATACATATAACAGGAAGCACGTTTTGGTtgctattttttttgttgtctgtgTTTGGTTTTGTTTTATACGAAATCATGCACCTAGCCTAGTAGTTGACATTTTTGGattgtttctttttttaaaaaGGTAAGAAAACTAGGAGTAAATCCACTTCGCTCTCGTGATCGTCGGCTTTGCCGTGGTGGTTGTTGTTATTATGAAGTTAGTGTTTTGTTCGTTCCaatctctcttcttttctctccattattctcctcctcttcattccTCCTGTCACCTGCCGCCGGTCATGTGTCTAAGTAGGATTGTTTTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562979 lncRNA downstream 30611 30471105 ~ 30471320 (-) True G495520
TU562977 lncRNA downstream 32751 30468974 ~ 30469180 (-) True G495518
TU562975 lncRNA downstream 33292 30468417 ~ 30468639 (-) True G495516
TU562935 lncRNA downstream 51941 30378245 ~ 30449990 (-) True G495480
TU562964 lncRNA upstream 3592 30522006 ~ 30523381 (-) True G495505
TU562999 lncRNA upstream 9860 30528274 ~ 30528571 (-) True G495540
TU563002 lncRNA upstream 12733 30531147 ~ 30531348 (-) True G495543
TU563005 lncRNA upstream 15938 30534352 ~ 30534597 (-) True G495546
TU563024 lncRNA upstream 61551 30579965 ~ 30582419 (-) True LOC110525719
XM_036981740.1 mRNA downstream 176985 30311060 ~ 30324946 (-) True LOC118965020
XM_036979817.1 mRNA downstream 292341 30199594 ~ 30209590 (-) True sftpbb
XM_021606082.2 mRNA downstream 310116 30189572 ~ 30191815 (-) True LOC110525709
XM_036981739.1 mRNA downstream 394236 30105365 ~ 30107695 (-) False LOC110525706
XM_021606074.2 mRNA downstream 521153 29976158 ~ 29980778 (-) True LOC110525703
XM_021606091.2 mRNA upstream 7620 30526034 ~ 30527686 (-) False LOC110525714
XM_021606093.2 mRNA upstream 18852 30537266 ~ 30553741 (-) True LOC110525715
XM_021606099.2 mRNA upstream 43007 30561421 ~ 30579113 (-) False si:ch211-102c2.8
XM_036979850.1 mRNA upstream 43204 30561618 ~ 30579045 (-) False si:ch211-102c2.8
XM_036979847.1 mRNA upstream 43204 30561618 ~ 30579112 (-) False si:ch211-102c2.8
TU561865 other downstream 826358 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 998540 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 1018585 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 1086617 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 2666629 27827231 ~ 27835302 (-) False LOC110525655
TU562998 other upstream 8272 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 26988 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 56704 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1142979 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1152564 31670978 ~ 31671927 (-) True G496777

Expression Profile