RNA id: TU562649


Basic Information

Item Value
RNA id TU562649
length 1906
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G495216
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30838144 ~ 30840251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGTCCATCAGGGCCTTGGGGGCCCTGGACAGGAGCCCCTCGTGGGTCAGGGAAGGTGTTGGAGAGGAGCAGCTTGCCCTGACCTGGAATACAGAGGACATGCACACAGACGAGTGGTTAAAAAGGACAATGGCAAGAGGACTGATGGAGCACTTCATTTACTGAACTGCATTACTGACAGGTGCCTACAGGGGGCAATGCTCTCACACAAATGTCCAGGCTTCTTTCAGAACCATCACACGGGCCCATCTTCTACATAGATAGGTAAATGTATGGCTAAATATCATATCATGATTATCACATTGTTTGCACTCATGTGTATGTGGAATTCATGTCCTACAAGTACACATGGTTCACTATTTAAGAATGACTTGAGTCACCTCCATTGACATTGTGCTGACAGAGCACTTCTGAGCTGCTCTACAtctgtgggaaagagagaggaaaaaaggtaGGAAATGTCCCAGTGATGTGGAAGTGTGTGGTTTTTAAGAGTTGTCTCAGGCTGACAGGGGGCACAGTGTTGATGGAGTGCCACagaagaggagagcagggaggagaAGGCCTATCAACGAGACACATCCTCCAGCTGCCACACTGACTCTAAACTCTGTTCCAGTCCCACACAACCCTTTCTAAAAATAGCTGCGGAGGTGAGGTGTCtgcctgtttttctgtctgttcGTCTGTTCTTCCGAGCCTCCCACTAGTCCGTCCTtcggtctgtctgcctgtctgtctctattgaAACATTCTTTATTGTTCTCTTCATTTCCTGCTCCTGTTCTTCAACACCTTCTCTGACATGGAGTTCATGTCCCTCTACTTTCCAACCCCACAATGTCCTGGGTTTACAATAGTGTCCTACATCTGTAATGTCTATGATCTTCTAAAACGGCTAGGTTcacacatcctctcctctctacctgtcccaCCTGAAGATAGCAGGGTTTATTCCCATTCTGTGACAGGAGATTCCAGCCTCCAGATCGATACGGGGAAGCCAATAAGCCAGTGTTTTCCAAAGGAAGCTCAGCACAGAACCCCTGCTTTCACTTTGATGTGAAGGAAACGGCTCCTAGTTTCAGAATTCTCAATGCCAACCCTGATTTACTTACAGCTAGAATTATCCATCTTTTCAACTACACAACCGACACTCTGCAGCCCATTTCCTCCTCTCTATTTTAGCCATTCAGCCCTCATACCTTCCCATATTGCCTGAGCTCCAACCTTGCGGGAGGTTGTATGAACCCCTGTTTCAGCTCCACATCTGGAAATGGTTGAGTGACATCAGTGATGGACAGGTTCTTATCCCAGTTTGTGTCTTcgcccctccctctgtctctctgtctctctctctctcccccatcatatatgtatatatttcccTTCCACAGACTCAGACCCTCTCAACCGGCACTCAATCACCTTCCTCTCAGGCCATTTTGGCAAGTAGACATGACCTGGGGAGAGGGAGTACCAGTTAAAACACATTGCATACATTTGTCTCTTTCTAATATCCTTACATTTATTCCCtcaacttcccacagagacagaaaagggctacctaagtatggttctcaatcagagacaacgatagacagctgtccctgattgagaaccctacccggccaaaacatagaaatacaaataatagaaccccccccaaaggtgcggactccggccaggAGACCGTCGCTGGgggatccggactggaggccgtcgtgggaggcttcgtgccatgactactcactggaggcttcgtgccatggatcatcactggaggcttcttgccatggatcatcactggaggcttcttgccatggatcatcactggaggcttcttgccatggatcatcactggaggcttcttgccatggatcatcactggaggcttcttgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562638 lncRNA upstream 2862 30831392 ~ 30835282 (+) False G495215
TU562646 lncRNA upstream 4941 30831392 ~ 30833203 (+) True G495215
TU562633 lncRNA upstream 5018 30831347 ~ 30833126 (+) False G495215
TU562644 lncRNA upstream 5018 30831392 ~ 30833126 (+) False G495215
TU562587 lncRNA upstream 29335 30807925 ~ 30808809 (+) True G495176
TU562697 lncRNA downstream 75693 30915944 ~ 30916945 (+) True G495262
TU562706 lncRNA downstream 85027 30925278 ~ 30925519 (+) True G495271
TU562711 lncRNA downstream 90843 30931094 ~ 30931392 (+) True G495276
TU562747 lncRNA downstream 125997 30966248 ~ 30967437 (+) True G495307
TU562789 lncRNA downstream 193899 31034150 ~ 31035975 (+) True G495345
XM_036979853.1 mRNA upstream 278348 30552561 ~ 30559796 (+) False LOC110525716
XM_021606094.2 mRNA upstream 278348 30553716 ~ 30559796 (+) False LOC110525716
XM_021606095.2 mRNA upstream 278348 30553727 ~ 30559796 (+) False LOC110525716
NM_001165149.2 mRNA upstream 314762 30518000 ~ 30523382 (+) False 4ebp2
XM_036979843.1 mRNA upstream 332079 30493972 ~ 30506065 (+) True LOC110525713
XM_036979873.1 mRNA downstream 166296 31006547 ~ 31022524 (+) False si:ch211-225b11.4
XM_036979872.1 mRNA downstream 167060 31007311 ~ 31022523 (+) False si:ch211-225b11.4
XM_036979870.1 mRNA downstream 167060 31007311 ~ 31022524 (+) False si:ch211-225b11.4
XM_036979874.1 mRNA downstream 167203 31007454 ~ 31022523 (+) False si:ch211-225b11.4
XM_021606125.2 mRNA downstream 168016 31008267 ~ 31022523 (+) False si:ch211-225b11.4
TU562537 other upstream 105254 30732352 ~ 30732890 (+) True G495132
TU562464 other upstream 261388 30576105 ~ 30576756 (+) True G495076
TU562306 other upstream 314761 30517976 ~ 30523383 (+) False 4ebp2
TU562307 other upstream 315201 30517976 ~ 30522943 (+) True 4ebp2
TU562321 other upstream 401459 30435962 ~ 30436685 (+) True G494943
TU562768 other downstream 168288 31008539 ~ 31010604 (+) False si:ch211-225b11.4
TU562769 other downstream 169365 31009616 ~ 31010604 (+) True si:ch211-225b11.4
TU563404 other downstream 454695 31294946 ~ 31312737 (+) True G495920
TU565098 other downstream 2087667 32927918 ~ 32928851 (+) True polk
TU565537 other downstream 2306216 33146467 ~ 33149998 (+) False LOC110525799

Expression Profile