RNA id: TU564205


Basic Information

Item Value
RNA id TU564205
length 226
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G496609
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31346919 ~ 31360911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTACAACCAAACTAAACCATGTATAATGACCCTGGCacatgtataatgtataatgtataatgacCCCAAGACAACAGACTTTCAAGCCCCAAAAGATAACCATGTGAGACCATTTTTGGGGTGAGGAAAGACAATACATATTGACATGAAATACAGTATGGCAAGCCCTCGACTTGTCTGGCATGTTTCGCAGACTATTTCCTCAAGAACAAGCAGTTCAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564191 lncRNA downstream 25257 31321463 ~ 31321662 (-) True G496595
TU564186 lncRNA downstream 41500 31302885 ~ 31305419 (-) True G496590
TU563391 lncRNA downstream 137020 31209623 ~ 31209899 (-) True G495908
TU563362 lncRNA downstream 162214 31184438 ~ 31184705 (-) True G495879
TU563311 lncRNA downstream 222494 31108909 ~ 31124425 (-) True G495831
TU564218 lncRNA upstream 1116 31362027 ~ 31362255 (-) True G496620
TU564221 lncRNA upstream 5611 31366522 ~ 31366759 (-) True G496623
TU564222 lncRNA upstream 9099 31370010 ~ 31370487 (-) True G496624
TU564246 lncRNA upstream 39723 31400634 ~ 31409115 (-) False G496640
TU564247 lncRNA upstream 39723 31400634 ~ 31409115 (-) False G496640
XM_021606132.2 mRNA downstream 26757 31315214 ~ 31320162 (-) True LOC110525734
XM_021606133.2 mRNA downstream 31856 31310900 ~ 31315063 (-) True LOC110525735
LOC110525732 mRNA downstream 40521 31305607 ~ 31306398 (-) True LOC110525732
XM_036979875.1 mRNA downstream 251029 31058538 ~ 31095890 (-) True LOC110525730
XM_021606123.2 mRNA downstream 346516 30966155 ~ 31000403 (-) False LOC110525727
XM_021606137.2 mRNA upstream 67749 31428660 ~ 31445225 (-) False LOC110525736
XM_021606135.2 mRNA upstream 67749 31428660 ~ 31445370 (-) False LOC110525736
XM_021606136.2 mRNA upstream 67749 31428660 ~ 31445370 (-) True LOC110525736
XM_021606139.2 mRNA upstream 97131 31458042 ~ 31464600 (-) True tmem119a
XM_036979880.1 mRNA upstream 104922 31465833 ~ 31518984 (-) False LOC110525740
TU563022 other downstream 771346 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 797469 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 819373 30526686 ~ 30527546 (-) True LOC110525714
TU561865 other downstream 1671346 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 1843528 29502253 ~ 29503391 (-) True LOC110525684
TU564400 other upstream 300482 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 310067 31670978 ~ 31671927 (-) True G496777
TU564492 other upstream 482552 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 1319131 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1966596 33327507 ~ 33330504 (-) True G498484

Expression Profile