RNA id: TU564247


Basic Information

Item Value
RNA id TU564247
length 445
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G496640
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31400634 ~ 31409115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagtttaattatgagtaaagatatctggtacaacgtatacgggcccatttcattcggttcttaaggaaccagcagaaaagagcccagataacagagtgcacatgtctcatatacagaacagaaagtaggttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564222 lncRNA downstream 30147 31370010 ~ 31370487 (-) True G496624
TU564221 lncRNA downstream 33875 31366522 ~ 31366759 (-) True G496623
TU564218 lncRNA downstream 38379 31362027 ~ 31362255 (-) True G496620
TU564205 lncRNA downstream 39723 31346919 ~ 31360911 (-) True G496609
TU564260 lncRNA upstream 14574 31423689 ~ 31423906 (-) True G496650
TU564262 lncRNA upstream 15806 31424921 ~ 31425166 (-) True G496652
TU564399 lncRNA upstream 250365 31659480 ~ 31659947 (-) True G496771
TU564403 lncRNA upstream 258918 31668033 ~ 31668357 (-) True G496775
TU564404 lncRNA upstream 260139 31669254 ~ 31669636 (-) True G496776
XM_021606132.2 mRNA downstream 80472 31315214 ~ 31320162 (-) True LOC110525734
XM_021606133.2 mRNA downstream 85571 31310900 ~ 31315063 (-) True LOC110525735
LOC110525732 mRNA downstream 94236 31305607 ~ 31306398 (-) True LOC110525732
XM_036979875.1 mRNA downstream 304744 31058538 ~ 31095890 (-) True LOC110525730
XM_021606123.2 mRNA downstream 400231 30966155 ~ 31000403 (-) False LOC110525727
XM_021606137.2 mRNA upstream 19545 31428660 ~ 31445225 (-) False LOC110525736
XM_021606135.2 mRNA upstream 19545 31428660 ~ 31445370 (-) False LOC110525736
XM_021606136.2 mRNA upstream 19545 31428660 ~ 31445370 (-) True LOC110525736
XM_021606139.2 mRNA upstream 48927 31458042 ~ 31464600 (-) True tmem119a
XM_036979880.1 mRNA upstream 56718 31465833 ~ 31518984 (-) False LOC110525740
TU563022 other downstream 825061 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 851184 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 873088 30526686 ~ 30527546 (-) True LOC110525714
TU561865 other downstream 1725061 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 1897243 29502253 ~ 29503391 (-) True LOC110525684
TU564400 other upstream 252278 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 261863 31670978 ~ 31671927 (-) True G496777
TU564492 other upstream 434348 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 1270927 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1918392 33327507 ~ 33330504 (-) True G498484