RNA id: TU564429


Basic Information

Item Value
RNA id TU564429
length 283
lncRNA type intronic
GC content 0.34
exon number 2
gene id G496801
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31759147 ~ 31759455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGAATTGTACAGCCTACTGTGCAAGCTATTGAGtgccacagtatgagtcataatacccataaaaccaatcatttttccaccattaAATTTTCCCATAGAGGATTTTAGAAAtacttcaaataagggctgtgtttcatgtaggtttaccctggcgtgatgttttgataactgtgtaaatctctcaAGGACAAGGTGAATTTTATCAATATAATTGTctgtatttaccccccaaaaatgaaaagctgattaGCTGATAATGtagctatcataaagaactataA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564417 lncRNA downstream 54102 31704664 ~ 31705045 (-) True G496789
TU564404 lncRNA downstream 89511 31669254 ~ 31669636 (-) True G496776
TU564403 lncRNA downstream 90790 31668033 ~ 31668357 (-) True G496775
TU564399 lncRNA downstream 99200 31659480 ~ 31659947 (-) True G496771
TU564262 lncRNA downstream 333981 31424921 ~ 31425166 (-) True G496652
TU564565 lncRNA upstream 235003 31994458 ~ 31994683 (-) True G496919
TU564566 lncRNA upstream 235821 31995276 ~ 31995499 (-) True G496920
TU564588 lncRNA upstream 264473 32023928 ~ 32024730 (-) True G496932
TU564607 lncRNA upstream 323432 32082887 ~ 32083103 (-) True G496950
TU564613 lncRNA upstream 333993 32093448 ~ 32093762 (-) True G496956
XM_021606173.2 mRNA downstream 643 31735854 ~ 31758504 (-) False LOC110525757
XM_036979889.1 mRNA downstream 954 31735854 ~ 31758193 (-) False LOC110525757
XM_036979890.1 mRNA downstream 955 31735854 ~ 31758192 (-) False LOC110525757
XM_036979891.1 mRNA downstream 958 31735854 ~ 31758189 (-) False LOC110525757
XM_021606174.2 mRNA downstream 6693 31737618 ~ 31752454 (-) True LOC110525757
XM_036979895.1 mRNA upstream 41514 31800969 ~ 31824128 (-) False LOC110525759
XM_036979894.1 mRNA upstream 41514 31800969 ~ 31824344 (-) False LOC110525759
XM_036979896.1 mRNA upstream 41514 31800969 ~ 31824344 (-) False LOC110525759
XM_036979897.1 mRNA upstream 41514 31800969 ~ 31824346 (-) True LOC110525759
XR_005052063.1 mRNA upstream 45385 31804840 ~ 31806652 (-) True LOC118964859
TU564405 other downstream 87220 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 97529 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1183574 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1209697 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 1231601 30526686 ~ 30527546 (-) True LOC110525714
TU564492 other upstream 84008 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 920587 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1568052 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1573195 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 2280904 34040359 ~ 34041174 (-) True G498960

Expression Profile