RNA id: TU565504


Basic Information

Item Value
RNA id TU565504
length 3322
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G497740
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33088967 ~ 33103783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccttagaatgctgcgccactcggaagcacTCAAACAATCAAGTTTTCAGGATAtagaactttcaaaatacagaaagagTCACAGTATGATGCGTATTTTGAAAAcctgattgctgacatgcaaaacattttgggaccgtatcaacagtggactaatgaaacacaTTTTTGAGTGTAATTTTCCTTTAACTCACTTCTCAATATAGCCCAAGTAACCTAGATATGTACAGGAAGTTGTACATTGTACACCCAGTGTTACATTATATTCAGATCTTATAACATCAAAGGAAAAAAGTTACAAGGTTGAATGTGTTTATTTAAATGTCTTTGTTTGAACAGTCATATTTTGTTATTTAAGATACCTTGAACTGTtatcaaataaacagcaaaaagACACAGTTCATGGTAAAAACTTTAGCATTTTTTAACAATACAGCACCTAGAATGTGTCATGAGTATGTAAGACATGGTTTGAAGTGCATGGAAGTACAAGTGGTATTTGGTTAGTGGTTATGGGATCAAAGTTCCACTAAAGGGAGGTTTTGTTGGGCAACACGGTGAGGATCTGGTTCTCTTATTCACTTTGTTGTCTTCTCCTCCGCTGtagccttctcctcctctgtagccttctcctcctctgtagccttctcctcctctgtagccttctcctcctctgtagccttctcctcctctgtagcCTTCTCCTCCGCTGTAGCCTTCTCCTCCGCTGTAGCCTTCTCCTCCTCCGTAGCCTTCTCCTCCTCCGTAGCCTTCTCCTCCTCCGTAGCCTTCTCCTCCTCCGTAGCCTTCTCCTCCGTAGCCTTCTCCTCCTCCGTAGGCTGCTTCTCCTCCATAATCTCCTCCAtaatctcctcctccaccaccaccttctcctccaccaccttcttctcctccttgtcATCAGGGCACAGCTCTTGTTTTTCCATCGTAGGTCTGGTGTTTCTCTGGGAAGttcagacactctgcctgtttCTTATAGGTGTCCAGGTATGTGTGATCCATTTTCCCTGTCCTTGAACAGGAGCAGGTATCTGCCAGTGACATCTCCATTACGAGATGTGTCTGACCAAAGCAGGCAGTCAGGGCAGGTCTCCAGGTACTGGCCTTTGTGTTCAGACAAATGAACTGTGGatccacaaaTGTGTACTGTGGAAGTGGTGCCGGAGATGGTAGCATGTGTTGTACCCACGATGCATTTTCCATCACTGATGGACATTTTGAAAAACGTGTTAGCATGTTGTATGATTCATTGCTTAGGTGCCAATTTGAAACATTGTCTTTGCTTTCAGAGAAAGGTCAAATTAAATGTCTACCATTGCACATACTTTCCTGATATTTAATAAAGCCCTTTCCAAACTACTATGACATTCACTAAAGTCTGCATTCATATCCACAATATAGCCAGACTTACATGCGGTCTCCCCATCTTAGGGTGACTACTTTATGGTCCGATGTAGCCGACAGGTCTATCCAGGAGCTTTTCAGAGTCCCCAAAGCATTTTGGAAGAATAAATGATCCGCAGACCCCATCACATACACCCATTTgccatagagctgccagtcaCAGACAAGGAAAAAAACATGAGTTTCATACCATCTAATTGCCTCATCCTATACCAATATGGACCATTTTGAAGTTGGAAGAAACACAAGGGTAGTATAGTAAAAAGAAAATGTGTAGGTGTTATGGATTAACATCCCTTGCCTTATCATGGATGTACAGTTGCCTATCCAATAGAAGACACaatgttttctttaatggaagcctttcTAATGCAAATTCGTTTGAGTGTGGAGTACCACAGGGCAGCCGGCTTGGACCATTTATTGTTTTTGGTGTTTACTAATGACTTTCCTTGAATAAAGCCTATGTGTCTATGTACTCTGACGACTCAACAGTATACACGTCGgctgcaacagtaaaataacTTACGTTTAAGGTAACTAACAATAAGCTGGTCCTAAACATCTCAAACTAAAAGCATAATTTTTGGGACAAATCACTCAAAACCCTAATCCTCATCTGGATCTATTATTGAATGTGgctattgagcaagttgaggagacaacTGCTGGGTGTCAACCTAGATGGCAAGCTTTGATGGTCAAAACATAATTATGACTGAACGGTTACTAAAATGGGATGAGGTCTGTCTATGGTAAGGCATTGCTCTGCTTTCTCTATCTCAGTCAACCagaccctagttttgtcacacctccACTACTGTCCAGTTGTGGTCAGGTGCAGCAAAGAAGGAATTAGGCAAATTGCAGTTGGTgcaaaacagagcagcacgtaTTGCACTTTGATGTACACGGAGTAcgaatgacatgcatgtcaatctctcctggctcaaagttgaggagagattgactgcatcacgaTTGGTCTTTGTGCGAGGTGTTGAAGGTACCAAACTGTCTGTTGAAGCAGTTGGCACACAGTTCGGACACTCATCGGCATAGCACAAGACAtccaaccagaggtctcttcacagtccccagttccagaacagaggctgggaaacacCGTATTAAatagagccgtgactacatggaactctgccACAgcaggtaactcaagctagcaataaaaCCAGACTCAAAGAACAGATAAAAGAACACCTTACAGCATGACGGGAACTGTGAAAACACAGACATTTATATGCATTTTGTGTTGTATTTTGCATTATGTATGTGATACGTGATTGGGATATGACTGTGGTATGTGCTTGTCTCACCATCTTAATATGAATGAACTAGCTTGTGGGTTGCTCTGGATGGGAGCGTCCGCTGAATGGTTAAATTGTAATGTAAATGTgctatatattatttattttatttgtgtttCCTATTTTggaaaccccaggaagagtaaatTGCAGATCCTAATAAATACTTCACAGCATCTGTCACTGTCCATAGTAGGTTTGCCGGATAGGGAGTAGAGTGTCATCTGAGACGTATTCATTAGGTCCAAAATATATTTAGTATTATGATCACAACTTACCTCGGTATGGTCCTCCAGTACCAGGGGTTTGACCAGTTCTTTACAGTCCGGTGCAGATGCAGCACTCAGAGAGGCTAGTGCCAGGAGAGCTACAACCAGCTGAACAGccatagagagaggtagagagagatggagcagagaCACTGAGGACGATCGTACAGTACAGATAGAGCAGAACACCTCTACTGCTGGGGCATATGCCTCCCGGAGGCTTAGACAAAAACACTGTTGCATAAGGGGCaatgtggaggaggaagaggggaggctTTCAACATGCTTCAATGCTTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565102 lncRNA upstream 160681 32937884 ~ 32938090 (+) True G497402
TU564940 lncRNA upstream 385566 32653971 ~ 32713205 (+) True G497253
TU564828 lncRNA upstream 633359 32464030 ~ 32465412 (+) True G497153
TU564821 lncRNA upstream 654233 32441571 ~ 32444538 (+) True G497146
TU564788 lncRNA upstream 707953 32390569 ~ 32390818 (+) True G497117
TU565525 lncRNA downstream 31540 33135323 ~ 33137970 (+) False LOC110525799
TU565514 lncRNA downstream 76532 33180315 ~ 33183152 (+) True G497749
TU565615 lncRNA downstream 89295 33193078 ~ 33197388 (+) True G497849
TU565618 lncRNA downstream 94359 33198142 ~ 33198539 (+) True G497852
TU565619 lncRNA downstream 95482 33199265 ~ 33199491 (+) True G497853
XM_036979942.1 mRNA upstream 6029 33008191 ~ 33092742 (+) True iqgap2
XM_036979941.1 mRNA upstream 6030 33008191 ~ 33092741 (+) False iqgap2
XM_036979940.1 mRNA upstream 94652 32978566 ~ 33004119 (+) True sv2ca
XM_036979938.1 mRNA upstream 98312 32969862 ~ 33000459 (+) False sv2ca
XM_036979944.1 mRNA downstream 31499 33135282 ~ 33165186 (+) False LOC110525799
XM_036979945.1 mRNA downstream 31499 33135282 ~ 33165186 (+) False LOC110525799
XM_036979946.1 mRNA downstream 31500 33135283 ~ 33165186 (+) False LOC110525799
XM_036979947.1 mRNA downstream 31500 33135283 ~ 33165186 (+) False LOC110525799
XM_021606235.2 mRNA downstream 69739 33173522 ~ 33177160 (+) True LOC110525801
TU565098 other upstream 169920 32927918 ~ 32928851 (+) True polk
TU563404 other upstream 1786034 31294946 ~ 31312737 (+) True G495920
TU562768 other upstream 2088167 31008539 ~ 31010604 (+) False si:ch211-225b11.4
TU562769 other upstream 2088167 31009616 ~ 31010604 (+) True si:ch211-225b11.4
TU562537 other upstream 2365881 30732352 ~ 30732890 (+) True G495132
TU565537 other downstream 42684 33146467 ~ 33149998 (+) False LOC110525799
TU565528 other downstream 50908 33154691 ~ 33164261 (+) True LOC110525799
TU565692 other downstream 213854 33317637 ~ 33320348 (+) True c6h22orf39
TU565715 other downstream 357852 33461635 ~ 33465055 (+) True LOC110525816
TU567034 other downstream 1047357 34151140 ~ 34151737 (+) True G499111

Expression Profile