RNA id: TU566350


Basic Information

Item Value
RNA id TU566350
length 1815
RNA type TUCP
GC content 0.45
exon number 4
gene id G498484
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33327507 ~ 33330504 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTGTGTATATCTAGTAGTGTGGGGTTGACCTCTTTCTCTGTGTCAAAGATCTCTCCTTCCTGGTGGCGGGGTCTCCTCAGCCTCTTCTTCTTGAAGTAGGCATCTGACAGAGTCTTGGGGATCTTCATGCCAGAGATGTCAACCTTGGTTGCTGTGGCAATGACAAACTTCTGGTGTGCCCGGCGCAGGGGAACACGGTTCAGGGCCAGGGGACCTAGAGGATGGAGAAAGCAAGAGGGTGATTGAGTTACAACTGAAAACGCAAGAACAGCATACTTTTCCAAACCTCACATCAAGATAAGGCTACCTAACGGGGTACTGCAGCTGCACAGACGTGAATGTGAGCTATAAAATCTCACTGGACATTCCGACCAGATCTACTCTATGCAACACTTGTTTGGCCAATTCACTGATTAATAGGAATGTTTCAAAGCACTGGTTGTTCTTACCAGTTACAAGCAGGAGACCACTGGAAAGCTGCTTCAGGAACACAACACgCTTTCCACGGTGGCGCCCAGTGAGTAGTACAAGCACGGTTCCTGGGGTGATGGTGGCACGCAGGTTCCTCTTGTGCTGGCTGAAAGGCTTCTTACCATGGTTCTTCAGCTTATGGGGCACATCCTCTGTGGGGTAGTAACGGGGCATCTTACGTATCTTGACAACACGAGTGCCTCCATTCTTGTCTCCACCAACAGTCTTGGTGATTGTGGATGGAGTCTTGACCTTCATCTTCTTCTCAATCTTGGTCTCAGTGGTCTTGGTCTTTCTCTTGTACATGGCCCTGCGGGCGTACATGGCGGTGCGGGAGTAGCGACCAATGCCCCTGGCCAGGACAGGGTTCCGGCTGCAATGAGCCTTCTTGGCCACCTTCTTCTTGTCTCCCTCTGCCATCTTGGGACAGACCAGGGGACCCGAATGGGTTAAAACATATGGATACAATACTATAGAACAATATTTATATAATCACTGGATGCATTACTGGTGAATCATGAACTGATCATACTGGCTAGCTAGATCCTTTGATGGTATGATGCTCAGAGGTTGCAGGTCATAGGTCAGGAGAGATAGCTAACTAAGTTAAGCACATTTGTGGCTCCAGATATTCAATAACAGGTAACCAAAGTACTAGTTTGTCATATTCCAATACAATATAACCAGCAGGCCCCATACTGGGAGGTGGCCTTTTAGCCATTGTTATTAAGTGGTTAGTTTGCCATAAACATTTCGATAGATCACATCTGCGACTTGCTAGCATAACAGAAACAAATAAATGCCAGCGTGCAGGTAAAACTCTGACATTTTAAACAGTCAATTAACTAGTTAGGCACGACAGACTTGTCAATATGCCAGAGTTGGCCAAAACACCTCAAACCTGGGAGTGAACACGCACGCATGACGTTATACCTTAGCCGGTAGCTACATCTAGCAATCTAGCTGGCTAACCTTTTGACTATTTCGGCAATTCTCTATAATATACCATTACACATAGATAAGTAATATCCGGTGACAAGCCACTAACGTATAAACCAGGGTACATAAACATAATATTGGTCAAACGTGAAATCTGCTCAAGTTACAACGCGTTGCGCTAGCATGTAGCCGTGGGCCTACATTTCCGAAACATAAAGCAATTTATTTACAAGGcaccacacaaaacacaacaattGTCATACATATTAACTGCTTAGGATACAAATAACATTCCCATGCGAATGGGAAATGGTTATTTAGTCCATTTTGCACAGATGAACACCGATTTTCTTTATGAAGTTGGGTGGGGAGAAACCAATCTTACCTTTGCTATGAAAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566351 lncRNA downstream 5600 33320257 ~ 33321907 (-) True LOC110525810
TU566275 lncRNA downstream 14388 33305597 ~ 33313119 (-) False LOC110526890
TU566297 lncRNA downstream 14388 33305597 ~ 33313119 (-) False LOC110526890
TU566305 lncRNA downstream 14388 33305597 ~ 33313119 (-) False LOC110526890
TU566318 lncRNA downstream 14388 33305597 ~ 33313119 (-) False LOC110526890
TU566382 lncRNA upstream 18024 33348528 ~ 33348859 (-) True G498516
TU566352 lncRNA upstream 29346 33359850 ~ 33364334 (-) True G498486
TU566386 lncRNA upstream 38457 33368961 ~ 33369198 (-) True G498520
TU566388 lncRNA upstream 43231 33373735 ~ 33374130 (-) True G498522
TU566401 lncRNA upstream 60088 33390592 ~ 33390885 (-) True G498535
XR_002473829.2 mRNA downstream 5651 33320253 ~ 33321856 (-) False LOC110525810
LOC110526890 mRNA downstream 14203 33298669 ~ 33313304 (-) False LOC110526890
XM_036979948.1 mRNA downstream 49308 33227813 ~ 33278199 (-) True LOC110525804
XM_036979949.1 mRNA downstream 49338 33227813 ~ 33278169 (-) False LOC110525804
XM_036979950.1 mRNA downstream 57085 33227813 ~ 33270422 (-) False LOC110525804
XM_021606250.2 mRNA upstream 2148 33332652 ~ 33336818 (-) False LOC110525812
XM_021606251.2 mRNA upstream 6499 33337003 ~ 33344085 (-) True LOC110525813
LOC110526891 mRNA upstream 239501 33570005 ~ 33576547 (-) True LOC110526891
XR_005052409.1 mRNA upstream 259352 33589856 ~ 33593095 (-) True LOC118965076
XM_021606262.2 mRNA upstream 394114 33724618 ~ 33730221 (-) True si:ch211-127m7.2
TU565305 other downstream 644660 32680042 ~ 32682847 (-) True LOC110525784
TU564492 other downstream 1434858 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 1655580 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 1665889 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 2751934 30575118 ~ 30575573 (-) True G495560
TU566347 other upstream 2146 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 709855 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 2434862 35765366 ~ 35767929 (-) True G501142
TU570258 other upstream 3177552 36508056 ~ 36517268 (-) True hk2
TU570775 other upstream 3720199 37050703 ~ 37064989 (-) True vamp8

Expression Profile