RNA id: TU565790



Basic Information


Item Value
RNA id TU565790
length 225
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G498010
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33513230 ~ 33513454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aatcctacaatgtgattttctggattttttttcttattttgtctgtcatagttgaagtgtacctatggtgaaaattacaggcctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgcccactgtATATTGTATGCTCAACAAAATGTGAATGATATTacattgctcagagaaagatttAGTAACAAGTAATACATTTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU565735 lncRNA upstream 111705 33401208 ~ 33401525 (+) True G497958
TU565725 lncRNA upstream 124811 33388179 ~ 33388419 (+) True G497948
TU565723 lncRNA upstream 126598 33385727 ~ 33386632 (+) True G497946
TU565722 lncRNA upstream 127852 33385161 ~ 33385378 (+) True G497945
TU565721 lncRNA upstream 128373 33384624 ~ 33384857 (+) True G497944
TU565798 lncRNA downstream 8867 33522321 ~ 33522610 (+) True G498018
TU565792 lncRNA downstream 30915 33544369 ~ 33545595 (+) True LOC110525819
TU565847 lncRNA downstream 234566 33748020 ~ 33750556 (+) True LOC110525823
TU565963 lncRNA downstream 264764 33778218 ~ 33779928 (+) True G498174
TU565982 lncRNA downstream 297489 33810943 ~ 33887959 (+) True G498191
XM_021606255.2 mRNA upstream 4959 33465992 ~ 33508271 (+) False LOC110525817
XM_021606256.2 mRNA upstream 4959 33465993 ~ 33508271 (+) False LOC110525817
XM_021606257.2 mRNA upstream 4959 33485349 ~ 33508271 (+) True LOC110525817
XM_036979959.1 mRNA upstream 48454 33447246 ~ 33464776 (+) False LOC110525816
XM_036979958.1 mRNA upstream 73559 33420413 ~ 33439671 (+) False LOC110525815
XM_021606258.2 mRNA downstream 1796 33515250 ~ 33568701 (+) False LOC110525819
XR_002473830.2 mRNA downstream 51246 33564700 ~ 33568701 (+) False LOC110525819
XM_036979961.1 mRNA downstream 87230 33600684 ~ 33691211 (+) True LOC110525821
XM_036979962.1 mRNA downstream 215642 33729096 ~ 33749929 (+) False LOC110525823
XM_021606263.2 mRNA downstream 223144 33736598 ~ 33749929 (+) False LOC110525823
TU565715 other upstream 48175 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 192882 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 348969 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 363232 33146467 ~ 33149998 (+) False LOC110525799
TU565098 other upstream 584379 32927918 ~ 32928851 (+) True polk
TU567034 other downstream 637686 34151140 ~ 34151737 (+) True G499111
TU573608 other downstream 5756505 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 6160558 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 6160558 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 6160558 39674012 ~ 39680031 (+) False LOC110525927

Expression Profile