RNA id: TU567034



Basic Information


Item Value
RNA id TU567034
length 598
RNA type TUCP
GC content 0.49
exon number 1
gene id G499111
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 34151140 ~ 34151737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cgactccattttgttgatccctgcctacagacagaaactaaaacaagaggctcccacgctgaggtctgtccaacgctggtccgaccaagctgactccacactccaagactgcttccatcacgtggactgggacatgtttcgtattgcgtcagacaacaacattgacgaatacgctgattcggtgtgcgagttcattagaacgtgcgttgaagatgccgttcccatagcaacgattaaaacattccctaaccagaaaccgtggattgatggcagcattcgcgtgaaactgaaagcgcgaaccactgcttttaatcagggcaaggtgtctggtaacatgaccgaatacaaacagtgcagctattccctccgcaaggctatcaaacaagctaagcgtcagtacagagacaaagtagaatctcaattcaacggctcagacacaagaggcatgtggcagggtctacagtcaatcacggactacaggaagaaatccagcccagtcacggaccaggatgtcctgctcccaggcagactaaatcacttttttgcccgctttgaggacaatacagtgccactgacacggcctgcaacgaaaacatgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU567014 lncRNA upstream 26500 34124380 ~ 34124640 (+) True G499092
TU567012 lncRNA upstream 27375 34123489 ~ 34123765 (+) True G499090
TU567007 lncRNA upstream 28553 34122097 ~ 34122587 (+) True G499085
TU567005 lncRNA upstream 29063 34121757 ~ 34122077 (+) True G499083
TU567001 lncRNA upstream 31567 34119125 ~ 34119573 (+) True G499079
TU567035 lncRNA downstream 802 34152539 ~ 34152766 (+) True G499112
TU567036 lncRNA downstream 1123 34152860 ~ 34153121 (+) True G499113
TU567052 lncRNA downstream 12644 34164381 ~ 34164748 (+) True G499129
TU567110 lncRNA downstream 98092 34249829 ~ 34251688 (+) True G499186
TU567125 lncRNA downstream 132870 34284607 ~ 34285317 (+) True G499201
XM_021606280.2 mRNA upstream 177353 33970403 ~ 33973787 (+) False fahd2a
XM_021606281.2 mRNA upstream 177353 33970404 ~ 33973787 (+) True fahd2a
XM_021606264.2 mRNA upstream 384660 33756104 ~ 33766480 (+) True LOC110525824
XM_036979962.1 mRNA upstream 401211 33729096 ~ 33749929 (+) False LOC110525823
XM_021606263.2 mRNA upstream 401211 33736598 ~ 33749929 (+) False LOC110525823
XR_002473696.2 mRNA downstream 125488 34277225 ~ 34278881 (+) True LOC110525024
XM_021606284.2 mRNA downstream 141040 34292777 ~ 34298399 (+) True LOC110525834
XM_021606289.2 mRNA downstream 224414 34376151 ~ 34414688 (+) True LOC110525837
XR_005052074.1 mRNA downstream 437806 34589543 ~ 34594418 (+) True LOC118964863
XM_036979972.1 mRNA downstream 633248 34784985 ~ 35201448 (+) False LOC110525840
TU565715 other upstream 686085 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 830792 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 986879 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 1001142 33146467 ~ 33149998 (+) False LOC110525799
TU565098 other upstream 1222289 32927918 ~ 32928851 (+) True polk
TU573608 other downstream 5118222 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 5522275 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 5522275 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 5522275 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 5522275 39674012 ~ 39680031 (+) True LOC110525927

Expression Profile