RNA id: TU567193


Basic Information

Item Value
RNA id TU567193
length 260
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G499261
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 34462364 ~ 34462623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTTATAGTTATTACCGTGATGCCCAGCTTGGAATGCACGCTTCACACCTATTGTATTATATCAATGGACAATGATCATGGCCCTACAGATCATCACGGGACAATTATGCCATTGATACAGtgcagtattcagacccctttactttttcaacattttttcaacattttgtaacattacagccttgttctaaaatgtattatattgttattgtcctcatcaatctacacacagtaccccataatgacaaagcaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567157 lncRNA upstream 132552 34329491 ~ 34329812 (+) True G499225
TU567156 lncRNA upstream 133279 34328882 ~ 34329085 (+) True G499224
TU567131 lncRNA upstream 157256 34303253 ~ 34305108 (+) True G499207
TU567125 lncRNA upstream 177047 34284607 ~ 34285317 (+) True G499201
TU567110 lncRNA upstream 210676 34249829 ~ 34251688 (+) True G499186
TU567249 lncRNA downstream 5577 34468200 ~ 34468478 (+) True G499316
TU567448 lncRNA downstream 14129 34476752 ~ 34476987 (+) True G499505
TU567452 lncRNA downstream 17188 34479811 ~ 34480176 (+) True G499509
TU567468 lncRNA downstream 27392 34490015 ~ 34490230 (+) True G499525
TU567495 lncRNA downstream 40978 34503601 ~ 34503829 (+) True G499548
XM_021606289.2 mRNA upstream 47676 34376151 ~ 34414688 (+) True LOC110525837
XM_021606284.2 mRNA upstream 163965 34292777 ~ 34298399 (+) True LOC110525834
XR_002473696.2 mRNA upstream 183483 34277225 ~ 34278881 (+) True LOC110525024
XM_021606280.2 mRNA upstream 488577 33970403 ~ 33973787 (+) False fahd2a
XM_021606281.2 mRNA upstream 488577 33970404 ~ 33973787 (+) True fahd2a
XR_005052074.1 mRNA downstream 126920 34589543 ~ 34594418 (+) True LOC118964863
XM_036979972.1 mRNA downstream 322362 34784985 ~ 35201448 (+) False LOC110525840
XM_036979971.1 mRNA downstream 322363 34784986 ~ 35201448 (+) False LOC110525840
XM_036979973.1 mRNA downstream 322364 34784987 ~ 35201448 (+) False LOC110525840
XM_036979974.1 mRNA downstream 322364 34784987 ~ 35201448 (+) False LOC110525840
TU567034 other upstream 310627 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 997309 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 1142016 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 1298103 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 1312366 33146467 ~ 33149998 (+) False LOC110525799
TU573608 other downstream 4807336 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 5211389 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 5211389 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 5211389 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 5211389 39674012 ~ 39680031 (+) True LOC110525927

Expression Profile