RNA id: TU567452


Basic Information

Item Value
RNA id TU567452
length 366
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G499509
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 34479811 ~ 34480176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTTTTTAGATTGGAGAAGGAATCAAACAATGTCGCAGCTTTTTCATCACTCATCTCGAGGCTTGCCTTCAACTCTTTTATATCCTTACTAACTAATTCAAGTATACCCAGTTTGTCATTTATTGATTTTAACAGAACGGTTTCGACCTTTACCATTCCCAGTGGTGAAAATATTAAATCGTCTGTGTCTGTAGAAGAGTCACGTTTTCGTTTTGGAatcggttcccctgtcttactctccgtcatgtttgggtgttgcttgttttcGTAATATTTGTCGATAAATGTCTCTAGTCTtaagatttgttttgtgttattatcCAGATTGAAGGTTATCACCCACCAGATTGTGTAGTGCTAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567448 lncRNA upstream 2824 34476752 ~ 34476987 (+) True G499505
TU567249 lncRNA upstream 11333 34468200 ~ 34468478 (+) True G499316
TU567193 lncRNA upstream 17188 34462364 ~ 34462623 (+) True G499261
TU567157 lncRNA upstream 149999 34329491 ~ 34329812 (+) True G499225
TU567156 lncRNA upstream 150726 34328882 ~ 34329085 (+) True G499224
TU567468 lncRNA downstream 9839 34490015 ~ 34490230 (+) True G499525
TU567495 lncRNA downstream 23425 34503601 ~ 34503829 (+) True G499548
TU567505 lncRNA downstream 30668 34510844 ~ 34511433 (+) True G499558
TU567545 lncRNA downstream 61601 34541777 ~ 34542213 (+) True G499598
TU567705 lncRNA downstream 172470 34652646 ~ 34659417 (+) True G499751
XM_021606289.2 mRNA upstream 65123 34376151 ~ 34414688 (+) True LOC110525837
XM_021606284.2 mRNA upstream 181412 34292777 ~ 34298399 (+) True LOC110525834
XR_002473696.2 mRNA upstream 200930 34277225 ~ 34278881 (+) True LOC110525024
XM_021606280.2 mRNA upstream 506024 33970403 ~ 33973787 (+) False fahd2a
XR_005052074.1 mRNA downstream 109367 34589543 ~ 34594418 (+) True LOC118964863
XM_036979972.1 mRNA downstream 304809 34784985 ~ 35201448 (+) False LOC110525840
XM_036979971.1 mRNA downstream 304810 34784986 ~ 35201448 (+) False LOC110525840
XM_036979973.1 mRNA downstream 304811 34784987 ~ 35201448 (+) False LOC110525840
XM_036979974.1 mRNA downstream 304811 34784987 ~ 35201448 (+) False LOC110525840
TU567034 other upstream 328074 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 1014756 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 1159463 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 1315550 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 1329813 33146467 ~ 33149998 (+) False LOC110525799
TU573608 other downstream 4789783 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 5193836 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 5193836 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 5193836 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 5193836 39674012 ~ 39680031 (+) True LOC110525927

Expression Profile