RNA id: TU567468


Basic Information

Item Value
RNA id TU567468
length 216
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G499525
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 34490015 ~ 34490230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctcaaaaatactgcagaaatgcaaaattgactgtccgatgaactcgggatggccgggcagtgataatGCTTcttctccatcgctcgttgtgttgatttcatcatgtccatttggtgatggtttttcactgttgaatcttattgcaaatgtactgtccatttgcaatatgtttcaatgggcatttaccatcatgaatttgacatgctcaaaaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567452 lncRNA upstream 9839 34479811 ~ 34480176 (+) True G499509
TU567448 lncRNA upstream 13028 34476752 ~ 34476987 (+) True G499505
TU567249 lncRNA upstream 21537 34468200 ~ 34468478 (+) True G499316
TU567193 lncRNA upstream 27392 34462364 ~ 34462623 (+) True G499261
TU567157 lncRNA upstream 160203 34329491 ~ 34329812 (+) True G499225
TU567495 lncRNA downstream 13371 34503601 ~ 34503829 (+) True G499548
TU567505 lncRNA downstream 20614 34510844 ~ 34511433 (+) True G499558
TU567545 lncRNA downstream 51547 34541777 ~ 34542213 (+) True G499598
TU567705 lncRNA downstream 162416 34652646 ~ 34659417 (+) True G499751
TU567835 lncRNA downstream 323346 34813576 ~ 34813844 (+) True G499867
XM_021606289.2 mRNA upstream 75327 34376151 ~ 34414688 (+) True LOC110525837
XM_021606284.2 mRNA upstream 191616 34292777 ~ 34298399 (+) True LOC110525834
XR_002473696.2 mRNA upstream 211134 34277225 ~ 34278881 (+) True LOC110525024
XM_021606280.2 mRNA upstream 516228 33970403 ~ 33973787 (+) False fahd2a
XR_005052074.1 mRNA downstream 99313 34589543 ~ 34594418 (+) True LOC118964863
XM_036979972.1 mRNA downstream 294755 34784985 ~ 35201448 (+) False LOC110525840
XM_036979971.1 mRNA downstream 294756 34784986 ~ 35201448 (+) False LOC110525840
XM_036979973.1 mRNA downstream 294757 34784987 ~ 35201448 (+) False LOC110525840
XM_036979974.1 mRNA downstream 294757 34784987 ~ 35201448 (+) False LOC110525840
TU567034 other upstream 338278 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 1024960 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 1169667 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 1325754 33154691 ~ 33164261 (+) True LOC110525799
TU565537 other upstream 1340017 33146467 ~ 33149998 (+) False LOC110525799
TU573608 other downstream 4779729 39269959 ~ 39311874 (+) True fancc
TU574234 other downstream 5183782 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 5183782 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 5183782 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 5183782 39674012 ~ 39680031 (+) True LOC110525927

Expression Profile