RNA id: TU571291


Basic Information

Item Value
RNA id TU571291
length 116
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G503063
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 37241078 ~ 37241193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAACAGTTTCCTTTTTTAACTTAATtaaaatacaacacacacacacacacacttagttcCTGAATAGGCAGTtcatacatacaaacatagtgctgtcgaaaagtattcagaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU571293 lncRNA downstream 1590 37239191 ~ 37239488 (-) True G503065
TU571234 lncRNA downstream 128370 37112403 ~ 37112708 (-) True G503011
TU571232 lncRNA downstream 129989 37110877 ~ 37111089 (-) True G503009
TU570807 lncRNA downstream 137741 37103006 ~ 37103337 (-) True G502610
TU570795 lncRNA downstream 149956 37090863 ~ 37091122 (-) True G502598
TU571336 lncRNA upstream 13657 37254850 ~ 37255220 (-) True G503108
TU571338 lncRNA upstream 19336 37260529 ~ 37260888 (-) True G503110
TU571340 lncRNA upstream 21628 37262821 ~ 37263127 (-) True G503112
TU571341 lncRNA upstream 22974 37264167 ~ 37264377 (-) True G503113
TU571342 lncRNA upstream 25974 37267167 ~ 37267379 (-) True G503114
XM_021606365.2 mRNA downstream 47926 37160379 ~ 37193152 (-) True LOC110525881
XM_021606364.2 mRNA downstream 138084 37097779 ~ 37102994 (-) True LOC110525880
XM_036980052.1 mRNA downstream 138204 37097779 ~ 37102874 (-) False LOC110525880
XM_021606362.2 mRNA downstream 163363 37068792 ~ 37077715 (-) False ncaph
XM_021606369.2 mRNA upstream 99512 37340705 ~ 37344076 (-) False ogfod2
XM_021606370.2 mRNA upstream 99512 37340705 ~ 37344078 (-) False ogfod2
XM_021606371.2 mRNA upstream 99512 37340705 ~ 37344084 (-) True ogfod2
XM_021606373.2 mRNA upstream 227565 37468758 ~ 37482116 (-) True LOC110525887
XM_021606382.2 mRNA upstream 387602 37628795 ~ 37778250 (-) True zmat4a
TU571292 other downstream 141 37239844 ~ 37240937 (-) True G503064
TU570775 other downstream 176089 37050703 ~ 37064989 (-) True vamp8
TU570258 other downstream 723810 36508056 ~ 36517268 (-) True hk2
TU569190 other downstream 1473149 35765366 ~ 35767929 (-) True G501142
TU566881 other downstream 3199904 34040359 ~ 34041174 (-) True G498960
TU571387 other upstream 90291 37331484 ~ 37336552 (-) False G503159
TU573476 other upstream 1713677 38954870 ~ 38967403 (-) True nsmfb
TU573890 other upstream 1964685 39205878 ~ 39206269 (-) True G505472
TU573913 other upstream 1991500 39232693 ~ 39233210 (-) True G505493
TU573926 other upstream 2180475 39421668 ~ 39423490 (-) True aopep

Expression Profile