RNA id: TU573898


Basic Information

Item Value
RNA id TU573898
length 520
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G505480
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39217192 ~ 39217711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGAGAAGTAGCTCATGCACACTTCTTACATTCAGTCCCAATCGGTTTTAATTGAATTGCCAAATCAGTAGGCCAGAGTGCCAAAGAATTATTGAGAACAAATAATGTATGTCTCATATAACTGGCCGTTGAGAGGCCTTTGTGATAGTGAAGTGTGCTGTGGATTGGTCACTCACTGCTGAGGCGTGTCTCGGGCATGGAGTCTGTGCGGTCGTGGAGCCACTCCGGGGGGTGCGGCCGTATGTTGGCCTGCGAGGCTGCGTACGCCACCGGGTCGTTGCTGACCCACGCCGTCAGGTAGATGTAAAACGCCCCCGGGTTGATGATGCCATCCGCATCCACCAAGCGCTGCCTCGTCAGCTAGAGGGGGAGACAAGGAGACACTAGTTCATTATTTGaaaagaaggatagagggagagggaaagagagggggcggGAGGacaagggagaaaggaagagaggaggtgagggataGTGTGTGTGATATTGATGGTTACAAATAttagatcttaatttgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573894 lncRNA downstream 6446 39210446 ~ 39210746 (-) True G505476
TU573893 lncRNA downstream 8866 39208085 ~ 39208326 (-) True G505475
TU573892 lncRNA downstream 9407 39207427 ~ 39207785 (-) True G505474
TU573891 lncRNA downstream 9922 39206975 ~ 39207270 (-) True G505473
TU573889 lncRNA downstream 11608 39205175 ~ 39205584 (-) True G505471
TU573899 lncRNA upstream 816 39218527 ~ 39218970 (-) True G505481
TU573900 lncRNA upstream 1960 39219671 ~ 39220391 (-) True G505482
TU573901 lncRNA upstream 5928 39223639 ~ 39224763 (-) True G505483
TU573902 lncRNA upstream 6098 39223809 ~ 39224078 (-) True G505484
TU573903 lncRNA upstream 7252 39224963 ~ 39225202 (-) True G505485
XM_021606433.2 mRNA downstream 110571 39090231 ~ 39106621 (-) True ercc6l2
XM_036980074.1 mRNA downstream 183761 39016692 ~ 39033431 (-) True pnpla7b
XM_036980075.1 mRNA downstream 185011 39016692 ~ 39032181 (-) False pnpla7b
XM_036980073.1 mRNA downstream 201691 39008111 ~ 39015501 (-) True LOC110525916
XR_005052095.1 mRNA downstream 201692 39006183 ~ 39015500 (-) False LOC110525916
XM_036980082.1 mRNA upstream 95760 39313471 ~ 39434970 (-) False aopep
XM_036980083.1 mRNA upstream 95760 39313471 ~ 39434970 (-) False aopep
XM_036980084.1 mRNA upstream 95760 39313471 ~ 39434970 (-) False aopep
XM_036980085.1 mRNA upstream 95760 39313471 ~ 39434970 (-) False aopep
XR_005052096.1 mRNA upstream 95760 39313471 ~ 39434970 (-) False aopep
TU573890 other downstream 10923 39205878 ~ 39206269 (-) True G505472
TU573476 other downstream 249789 38954870 ~ 38967403 (-) True nsmfb
TU571387 other downstream 1880640 37331484 ~ 37336552 (-) False G503159
TU571292 other downstream 1976255 37239844 ~ 37240937 (-) True G503064
TU570775 other downstream 2152203 37050703 ~ 37064989 (-) True vamp8
TU573913 other upstream 14982 39232693 ~ 39233210 (-) True G505493
TU573926 other upstream 203957 39421668 ~ 39423490 (-) True aopep
TU575200 other upstream 405974 39623685 ~ 39624344 (-) True G506641
TU575254 other upstream 545580 39763291 ~ 39764776 (-) True LOC110525929
TU575314 other upstream 619937 39837648 ~ 39838160 (-) True LOC110525932

Expression Profile