RNA id: TU573904


Basic Information

Item Value
RNA id TU573904
length 231
lncRNA type intronic
GC content 0.51
exon number 1
gene id G505486
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39227003 ~ 39227233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAACAGGGAACGTCAGGGCAACATTTCTTTCAGCGTGAGCAGAAAAATACGAGCAGGCTGTGCTGTTATTCTGCAGTCTTCTGGCACTGCTTTGTTTGGGGAAAAAACACCCCACACTTCAAATGGCCTGAGACAGATCCTGAGAGCAGTGTGAAccagaggagggaaggagagaaggacgggttagtgtgtgggtgtgtgcactCTCACTCCCTGGCACGTCATCGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573903 lncRNA downstream 1801 39224963 ~ 39225202 (-) True G505485
TU573901 lncRNA downstream 2240 39223639 ~ 39224763 (-) True G505483
TU573902 lncRNA downstream 2925 39223809 ~ 39224078 (-) True G505484
TU573900 lncRNA downstream 6612 39219671 ~ 39220391 (-) True G505482
TU573899 lncRNA downstream 8033 39218527 ~ 39218970 (-) True G505481
TU573907 lncRNA upstream 2821 39230054 ~ 39230524 (-) True G505489
TU573908 lncRNA upstream 4409 39231642 ~ 39231974 (-) True G505490
TU573912 lncRNA upstream 4976 39232209 ~ 39232544 (-) True G505492
TU573911 lncRNA upstream 6187 39233420 ~ 39233840 (-) True G505491
TU573978 lncRNA upstream 112626 39339859 ~ 39362610 (-) True G505551
XM_021606433.2 mRNA downstream 120382 39090231 ~ 39106621 (-) True ercc6l2
XM_036980074.1 mRNA downstream 193572 39016692 ~ 39033431 (-) True pnpla7b
XM_036980075.1 mRNA downstream 194822 39016692 ~ 39032181 (-) False pnpla7b
XM_036980073.1 mRNA downstream 211502 39008111 ~ 39015501 (-) True LOC110525916
XR_005052095.1 mRNA downstream 211503 39006183 ~ 39015500 (-) False LOC110525916
XM_036980082.1 mRNA upstream 86238 39313471 ~ 39434970 (-) False aopep
XM_036980083.1 mRNA upstream 86238 39313471 ~ 39434970 (-) False aopep
XM_036980084.1 mRNA upstream 86238 39313471 ~ 39434970 (-) False aopep
XM_036980085.1 mRNA upstream 86238 39313471 ~ 39434970 (-) False aopep
XR_005052096.1 mRNA upstream 86238 39313471 ~ 39434970 (-) False aopep
TU573890 other downstream 20734 39205878 ~ 39206269 (-) True G505472
TU573476 other downstream 259600 38954870 ~ 38967403 (-) True nsmfb
TU571387 other downstream 1890451 37331484 ~ 37336552 (-) False G503159
TU571292 other downstream 1986066 37239844 ~ 37240937 (-) True G503064
TU570775 other downstream 2162014 37050703 ~ 37064989 (-) True vamp8
TU573913 other upstream 5460 39232693 ~ 39233210 (-) True G505493
TU573926 other upstream 194435 39421668 ~ 39423490 (-) True aopep
TU575200 other upstream 396452 39623685 ~ 39624344 (-) True G506641
TU575254 other upstream 536058 39763291 ~ 39764776 (-) True LOC110525929
TU575314 other upstream 610415 39837648 ~ 39838160 (-) True LOC110525932

Expression Profile