RNA id: TU573919


Basic Information

Item Value
RNA id TU573919
length 1057
lncRNA type read_through
GC content 0.34
exon number 2
gene id G505498
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39435861 ~ 39531424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggctacccgaaacgtttgccccaagttaaacactttaaaggcaatgctaccaaatactaactgagtgtaggtaaacttctgacccactgggaacatgatgaaagaaataaaagttgaaataaataattctctatactgttattctgacatttcatatttgtaaaataaagtggtgagcctaactgacctaagacagggaatttttactctaattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaaggtgtatgtaaacttccgacttcaactgtgtgtgtgtgtatataattttTTGTTAGCCTATTATGTCTCTGTAGATACTAACAAAGATTAATTTATTATGTGTTCACAAATGCATCAAGGCACATACATCATAACTGATGCCATCACCAACCAAACCTAAATGGCAAATCTGTATGTACACAGAGACTGAAATGCTATTTAGATGACACATCAGAGAATGAAAATACAAATGTTTACAGTtatgatacatttattttattttcttcatgaaaatatatattttagataatatacagtatcatcACTTTAGCTGGCAATaacaatattgaaacaatgttgtttACCATGACTAAATGTGACAAAGCCAATGCACATATCaagtttgtttttgttgttgaaaaaattGTATTAGGTGCCAAAATAAAGACATCCTACAATCTATGTTTACTGTACCAACAAGACAGGTTTCAAGTATTTGCCCAGGCTCTTAATCTTGTTTGTTAATGTTGATGTCATGTTGTAGAACGTCATGTATACCAATAGAGAAATCCTTTGTAATACTACTGGGAAACGCAATACTCTGATTAGAAATACTTATGGGCAAAGATGGGTATGGGTATTCATTCACATTATATTCTGTGTTCTGTTACATTGTAGCTGCATAATAGTACAGTAAGTGAGTATAGGACATACTGTAGGTAGTGGCCTACCAATAAACACTGGATTCCTTGTTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574042 lncRNA downstream 4977 39430676 ~ 39430884 (-) True G505615
TU574034 lncRNA downstream 17976 39417659 ~ 39417885 (-) True G505607
TU574033 lncRNA downstream 19052 39416599 ~ 39416809 (-) True G505606
TU574017 lncRNA downstream 39611 39395992 ~ 39396250 (-) True G505590
TU574016 lncRNA downstream 40042 39395438 ~ 39395819 (-) True G505589
TU574143 lncRNA upstream 2692 39534116 ~ 39535469 (-) True G505711
TU574171 lncRNA upstream 64373 39595797 ~ 39596013 (-) True G505739
TU574175 lncRNA upstream 68503 39599927 ~ 39600187 (-) True G505743
TU574180 lncRNA upstream 72673 39604097 ~ 39604391 (-) True G505748
TU574184 lncRNA upstream 76148 39607572 ~ 39607797 (-) True G505752
XR_005052099.1 mRNA downstream 890 39320918 ~ 39434971 (-) False aopep
XM_036980086.1 mRNA downstream 890 39340105 ~ 39434971 (-) False aopep
XM_036980082.1 mRNA downstream 891 39313471 ~ 39434970 (-) False aopep
XM_036980083.1 mRNA downstream 891 39313471 ~ 39434970 (-) False aopep
XM_036980084.1 mRNA downstream 891 39313471 ~ 39434970 (-) False aopep
XM_021606443.2 mRNA upstream 87858 39619282 ~ 39670076 (-) True LOC110525926
XM_036980091.1 mRNA upstream 148070 39679494 ~ 39697830 (-) False ndufaf2
XM_036980090.1 mRNA upstream 148070 39679494 ~ 39715116 (-) True ndufaf2
XM_021606452.2 mRNA upstream 220302 39751726 ~ 39778537 (-) False LOC110525929
XM_021606450.2 mRNA upstream 220302 39751726 ~ 39778538 (-) False LOC110525929
TU573926 other downstream 12371 39421668 ~ 39423490 (-) True aopep
TU573913 other downstream 202651 39232693 ~ 39233210 (-) True G505493
TU573890 other downstream 229592 39205878 ~ 39206269 (-) True G505472
TU573476 other downstream 468458 38954870 ~ 38967403 (-) True nsmfb
TU571387 other downstream 2099309 37331484 ~ 37336552 (-) False G503159
TU575200 other upstream 92261 39623685 ~ 39624344 (-) True G506641
TU575254 other upstream 231867 39763291 ~ 39764776 (-) True LOC110525929
TU575314 other upstream 306224 39837648 ~ 39838160 (-) True LOC110525932
TU575349 other upstream 355598 39887022 ~ 39889931 (-) True G506785
TU575676 other upstream 1009235 40540659 ~ 40542329 (-) True G507063

Expression Profile