RNA id: TU573790


Basic Information

Item Value
RNA id TU573790
length 2796
lncRNA type antisense_over
GC content 0.51
exon number 3
gene id G505377
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39464768 ~ 39484669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCATGTGTATCAGTACCTTAGCTGACAGGATGTTTTTGACCTCTGTGTCCTCTGCACTGTGTGGAGCAGGGATATCAGGGTTGCTGCTGCTGCGGAGCCGAGACTGCAGTAACATGGCTCCTACTGTGGAGGCCGAGGCCCGCCCCATAGTACTGTAGCGGCCCTCAGTGGGAGGTAACACCCCATCTGGACCTGGACACACAGGGGAGAGCCATGTCACTGGCATGATCTACCTCGTCACACCTCGCTTTACACACTGAACCTGCACACTGATCCTAAACACTAAACCTGCACACTGAACCTAAACCTACACACTGAACCTAAACCTACACACTGAACCTAAACCTACAGAGTGAACCTAAACACTAAACCTGCACACTGAACCTACACACTGAACCTAAACCTACACACTGAACCTAAACCTACACACTGAACCTAAACCTACACACTGAACCTAAACCTACACACTGAACCTAAACACTAAACCTGCACACTGAACCTAAACACTAAACCTGCACACTGAACCTAAACACTAAACCTGTACACTAAACCTGCACACTGAACCTAAACCTACACACTGAACCTAAACACTAAACCTGCACACTGAACCTACACACTGAACCTACACACTGAACCTAAAGACTAAACCTGCACACTGAACCTGCACACTATACCTGCACACTAAACCTACACACTGAACCTGAACCTACACACTTAACCTACACATCTATACGGGGCTTGTGAAGTTTggaggtggggagtggagtggGAGGTTTATTGGGGGAGAGGGGGGCTGTGGGAGGGTCTCGAATGCTAGAGGGGCAGCTCTTGGGGGAACTGTGGGGGATCTTGGATGGTTGGTGGCCTGGCGGTTGGGAGGTTGGGCCTGTGGCCAAGAGGCGGGAGGTTATTCAAGTCCCCAATTATTTGACtttgtgggagatctgtcgatgtgccccTGGGTGGGAAGCTTGACCCTGGTTGCTCCTGTGGGTCGCTCTGGACGGGAGTGTCTGCtagatgactgaatgtaatgtaaatgttgagcggcttcactgcaggtAAGAGGAAGTAAGAATCAAGTGCGAGGAgggggtgctgtgggattatttaagatactctttgaagaggaagggtttcagatgttttcagacgatgggcagggactctgctgtcctagcttcagggggaagctggtcccaccattggggtgccaggacagagaagagtttgGACTCGGCTGAACTGGAGCTGCCCTCCCGTTGgtgtgggagggccaagagaccagaggtggcagaacggagttggggtgtagggtttgagaaTGAGCCTGAAGATAGGAAGTACCAGGGTCTTGTAGTGGATCCgagctttgactggaagccagtggagtgtgcggaggaccgggggtgacatgggagaatttgggaaggttgaacaccaggcgggGTGCAGCGTTCTGGATTAGATGCAGTGGTTTGATGGCACCGGCGAGGAGCCCaaccaacagcgagttgcagtagtccaggcGGGAGATGGTAAATGCCTGGATTAGGACCGGCGCCGCTTCCTGTGTGCGGCAGGGTtgtactctacagatgttgtagagcatgaacctgcgtagcaagtcactgctttgatgtttgtagAGAACGACAGGGTCACGCAAAGGTTCTTTGCATTCTGGGAGGGGGACACCATGGAGTTGTCAACTGTGATGAAGTTTTGGCAGTGCAGAGAGCCTCCAGGACACAAagaagagcagtctcggttgagtgacaCGTTTTGATGGTTAGGGTGAAGAAGATGGTTCTGAGAGAGATAGTGTGAGAGTCGGTCAGAGACAGCACGCataagtgttttggaaagaaaataaagaagGGCCTGTAGTTTTTGACATCAGAGGGTGTTGGTTTCCTGAGGAGGGGAGCGATTCTGGAaatgtttgagtcagtggtctgggatgagggaagtgagaaggtctccagagatggtcgagagaagggaggaggggatggggtcgagCGGGCAGGTTGTCAGGTGGCTGAACCTCACTAGtcgcaggatttcatctggagagagaggggagaaagaggtcaaggcgtagGGTAGTGGGAGTGGGACCAGTGGATTCAATAAGCTGAGTGAATGAAGAGCGGATGTCGACAATTTTCTTTTTAAAGTGGCTGACAAAGTCAtctgcagagagggaggaggtggggtggaggattaaggagggaggagaaggtggaaaaagtttcctagggttagaggcagacaCTTGAAATCTAGCGCAATAGAAAGTGCTTTtagcagcagatacagaggaagagaaggtagagaggagggagtgaaaggataATAGGTCCTCCAGAAGTGAAGTTCTCCTCCATTGCCTCgtaatgagtcactcagccacagagcaggaggggagggccgaGCCGGCCGGGAAGAAAGGGGAAAGGATAAAGTCATAAAGTCATAGCATGCGTAAAGGGAGGTTAGTAGGGTCGAAGAGGCAggaggatttagcagaagggagataTGATAGAAGAGGAaaagagtagagacagagagagagagagagagagagagacagagagactgagagacagagagagagagagagagagagagtgtgagagagagtgtgagagacagcgacagaagagagagaacctCAGTCACCAAACCCCTCGTTTCCAGATCGAGTCATATCAATTGTAATTGGTTAAACAAGCCGGACAGTATGTCATCCTGGGCTGTAACAGAGGGATGATTCATGGGCCAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573775 lncRNA upstream 31867 39432680 ~ 39432901 (+) True G505363
TU573771 lncRNA upstream 34736 39429805 ~ 39430032 (+) True G505359
TU573768 lncRNA upstream 37865 39426668 ~ 39426903 (+) True G505356
TU573766 lncRNA upstream 39611 39424799 ~ 39425157 (+) True G505354
TU573761 lncRNA upstream 45280 39419262 ~ 39419488 (+) True G505349
TU574128 lncRNA downstream 97342 39582011 ~ 39587770 (+) True G505697
TU574233 lncRNA downstream 182585 39667254 ~ 39667805 (+) True G505795
TU574244 lncRNA downstream 186484 39671153 ~ 39671452 (+) True G505803
TU574269 lncRNA downstream 231722 39716391 ~ 39717493 (+) True G505827
TU574300 lncRNA downstream 280299 39764968 ~ 39765533 (+) True G505857
XR_005052100.1 mRNA upstream 59507 39402537 ~ 39405261 (+) True LOC110525923
XM_021606437.2 mRNA upstream 152670 39269915 ~ 39312098 (+) False fancc
XM_021606436.2 mRNA upstream 152670 39269926 ~ 39312098 (+) False fancc
trnaa-ugc-17 mRNA upstream 176106 39288589 ~ 39288662 (+) True trnaa-ugc-17
XM_036980080.1 mRNA upstream 229894 39158478 ~ 39234874 (+) True ptch1
XM_036981746.1 mRNA downstream 37054 39521723 ~ 39526646 (+) True cbwd
XM_036980089.1 mRNA downstream 49267 39533936 ~ 39535789 (+) True foxd5
XM_021606441.2 mRNA downstream 51975 39536644 ~ 39583427 (+) True pgm5
XM_036980092.1 mRNA downstream 189295 39673964 ~ 39678265 (+) False LOC110525927
XM_021606445.2 mRNA downstream 189298 39673967 ~ 39678265 (+) False LOC110525927
TU573608 other upstream 152894 39269959 ~ 39311874 (+) True fancc
TU567034 other upstream 5313031 34151140 ~ 34151737 (+) True G499111
TU565715 other upstream 5999713 33461635 ~ 33465055 (+) True LOC110525816
TU565692 other upstream 6144420 33317637 ~ 33320348 (+) True c6h22orf39
TU565528 other upstream 6300507 33154691 ~ 33164261 (+) True LOC110525799
TU574234 other downstream 189343 39674012 ~ 39678263 (+) False LOC110525927
TU574235 other downstream 189343 39674012 ~ 39678263 (+) False LOC110525927
TU574236 other downstream 189343 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other downstream 189343 39674012 ~ 39680031 (+) True LOC110525927
TU574282 other downstream 250115 39734784 ~ 39748480 (+) True LOC110525928

Expression Profile