RNA id: TU575200


Basic Information

Item Value
RNA id TU575200
length 546
RNA type TUCP
GC content 0.43
exon number 2
gene id G506641
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39623685 ~ 39624344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgggagactctgtccataggacaacaatcagtggtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacgagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatcccaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU575198 lncRNA downstream 6394 39616938 ~ 39617291 (-) True G506639
TU574184 lncRNA downstream 15888 39607572 ~ 39607797 (-) True G505752
TU574180 lncRNA downstream 19294 39604097 ~ 39604391 (-) True G505748
TU574175 lncRNA downstream 23498 39599927 ~ 39600187 (-) True G505743
TU574171 lncRNA downstream 27672 39595797 ~ 39596013 (-) True G505739
TU575359 lncRNA upstream 281205 39905549 ~ 39905853 (-) True G506795
TU575369 lncRNA upstream 308176 39932520 ~ 39932855 (-) True G506802
TU575372 lncRNA upstream 323157 39947501 ~ 39947725 (-) True G506805
TU575373 lncRNA upstream 327355 39951699 ~ 39951922 (-) True G506806
TU575435 lncRNA upstream 424285 40048629 ~ 40048833 (-) True G506865
XM_036980087.1 mRNA downstream 106562 39440552 ~ 39517123 (-) False dock8
XM_036980088.1 mRNA downstream 106562 39440552 ~ 39517123 (-) True dock8
XR_005052099.1 mRNA downstream 188714 39320918 ~ 39434971 (-) False aopep
XM_036980086.1 mRNA downstream 188714 39340105 ~ 39434971 (-) False aopep
XM_036980082.1 mRNA downstream 188715 39313471 ~ 39434970 (-) False aopep
XM_036980091.1 mRNA upstream 55150 39679494 ~ 39697830 (-) False ndufaf2
XM_036980090.1 mRNA upstream 55150 39679494 ~ 39715116 (-) True ndufaf2
XM_021606452.2 mRNA upstream 127382 39751726 ~ 39778537 (-) False LOC110525929
XM_021606450.2 mRNA upstream 127382 39751726 ~ 39778538 (-) False LOC110525929
XM_021606451.2 mRNA upstream 127382 39751726 ~ 39778538 (-) False LOC110525929
TU573926 other downstream 200195 39421668 ~ 39423490 (-) True aopep
TU573913 other downstream 390475 39232693 ~ 39233210 (-) True G505493
TU573890 other downstream 417416 39205878 ~ 39206269 (-) True G505472
TU573476 other downstream 656282 38954870 ~ 38967403 (-) True nsmfb
TU571387 other downstream 2287133 37331484 ~ 37336552 (-) False G503159
TU575254 other upstream 138947 39763291 ~ 39764776 (-) True LOC110525929
TU575314 other upstream 213304 39837648 ~ 39838160 (-) True LOC110525932
TU575349 other upstream 262678 39887022 ~ 39889931 (-) True G506785
TU575676 other upstream 916315 40540659 ~ 40542329 (-) True G507063
TU576563 other upstream 1796680 41421024 ~ 41461922 (-) True G507906

Expression Profile