RNA id: TU574491


Basic Information

Item Value
RNA id TU574491
length 4550
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G506019
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40021735 ~ 40026395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTATTTAGGTTTCTCCATACCATACATTTTACTGTACAACGGCACATATTTCTGAAATAACTCCCATTATAAAATAGGGCATCTACAATTAAGGTACAGTCATAAAATGCTTTCAGGGAAAAAAGACGACAAAAGCAACAGTAGAACATCTTCATATAAAGCGCAGGGGATTCAGGAAATGATTTGTTGTCGACAAAGCAGAGATTCAGACCACTCATTTCAGAGTACCTTCCATCCTGCTTAAGACCCGTTTTCTCTTGGTTTTGAACTGAGATCTATCAGTTGAAAACAAAATATGACATAACTGGTGCAAATTTCAAGCCAGAACCTTGATTTAGGACTGCAAATCAAATTTGGAGAAGCAACACAATTTTTCTGTACGATCAGAAACTAATATCATTGTTATTTCTCGTTTTTTCCCCTGACATGGTCAAAAGGTGGGAACAATCACTAATACACACAAGAAAGTGGATACCGTCGAAGCGACAAGTAAATTAGCTTATCATTAACATAGTCAACATCAGTAATGATTGTTCAAAAATCCATTAGAGTGGATCTGCAGTCAAGCTGACAAAAAGCTATGTGGATCTAAGCGTGTGGTTGGGCCTATAGTGGGCCTGTGTCATTTCAAATAAAGTACATAGACCTACCAGCTTCAGTGTTAGTTCACTAGTGTTTCAGGTGTGGAATATACATGACATTTGACATCCAAGCTGTGTATGAGGGAGTGTGTATAACTAAGGAAAGAGAAAAGATACAATCTGCCATTATATGAAGTGAGAAGCCATTGTCTTTAACAGACATtcaaagaagagaaagagaagattTGTCTGAAGTCTTGAGGTAAGCAATGTGTTTCAATAGAACGCCCTACTGACAATCATATAGTTACAATCACCTTCTGTACAAACTTCCTGATTCACACACTGAACTGCAACAAGCCCCTATGCTAAAATAGAACAAAAAATAACTTTATGTGTATCTTCACAATCTGAAATGCAGGTTCAGTTAAATTATTGAcggggcgtcaggtagcctagtggttagagcgttgggcgagtaaccgaaagtttgctggatcgaattcccgagctgacaaggtcaaaatctgtcgctctgcccctgaacaaagcagttaacacactgttccccggtaggctgccattgtaaataagaatttgttcttaacggacttgcctttTTAAATTAATTCAAATAAAATAGACTTTAGTCCATTATTTCAGCTTAAAGAGGCTATGATGAGATTACGGCTACAAAGAGTTCCTTTATGCCGGTTTGAAAACACAACACAGACAAAGCATAATATTCAGCCACCTAGCAACACTCACACTGTACACACCTCCAACATTCTGTAAGAGTGCAAATTttgctgataaaaaaaaacatacgcTTGGCAAAATAATGAGCACgaattcctttaaaaaaaatagggGGGTAGATGTGGAGAGTAATGTGCTTGGAAATAACCCAATAAAACAAGGTAGGCTATGTATAGGAGCTGATAATGTCCACCTTTATAGATGTTTATATAATGTTTATACTTTAGAATGAGTTGAATGGGTTTGTGTTACCTCAAACCCCTGACACAGTGATACATCCAATTTGTTATAGGCTTCCCTTAGAGGGTAACATGACATCCTCTGGGCGAGCAGACACAATAGAACCATCTGGAACACAAGCAGCATCCTACTCACAGAATGACGTCACTGTAATTCTACAGTATGGTTCAAATGACCCCCTCCTACTTGTTCTGCTTTCAGAGCAGAAGACAAAGATCATATTTAACAACAGGCTACCGAAGATCTACAAGTACCTCAAAAACATTCATCCACTGAGTAGCTCCACTAATGAGATGTGTGTGTCTCttgtagatgggggggggggggggggggggggggtgaatgtcCTATAGTAACAGCTTGAACACTCACTGGCACTAAAGACTGTAAATGAGACATGACAAAGAGCAACAAATTCTACAAGGAAGATAAAACAACAAGGATGCTATCTGATGCTACAGTACTAGTGCTACCTGAACATGCTACTGATTGAGACTGCAGAGCTATGCTCCCCTGCCATACTATACCAttccccacaaacacacacacacaccctgaaatAAGGAAGGATTTCCCTCAtcatacaacactattattactGATTATCCATGACAGAATTGGGATTGCATACGGTACACCTTCTTAGAGACACCCTTCActgttatcatcactatcatcttATCATTTAAAATGAGTAAATTCTCCCAAATCACAAATGTTCCTCATCATAACAATACCATGTTGTCTATGGACACCCTAACCTTTAGCTCATTCTAGATATCCATGAGATTAGCTAAATGTGTCATTTGTGTGCACTATCCATTTAGTCAGATAACCCAGACGATTGCCCTAGTCAAACAACTCCAGTTGGATGCTCTATAACGGAATGCATGTAGAAAGTTTCCAGCAGACTTCAATCACTAGTCTGACTAAACCAGCCCACCAACACTCTGCTATACCATGGCTAGTCAGCTGTTGGCTTGACTGACCTGTCTAAATGCTAATCTCAAATGAAACCATTTTTATTATGtaattcactacttttgaccagagaaacACAGGGCATATGATCAAAAGTAGAACATTATATAGGGACCTAAACATTATATTTGAGACGAAGGCTAAATCCCAGTTCAGATACAACAGCCGACATGAGACGAGATAACAAGTAGCTCATTTTAGAacgttgtacaactgactaaaGAAGGGGAAATCAGATCAAGACGAGAAGTGCAGTTGAGACCTTTTCCACAGTAACACTGCCTCTTTATAATGACGTGATTAAACTTTGAAACGAAGTTGCCACTTGTAGCAAACGAGTGTCCTGAAATACATGCACCAGAAACAGGGTACACTTTATGACTTGTCAGATAAATACTTTTATCAGCAAGCTAGGCTAGCTATGTGCAGCAACATAGCTAGCTAATTGTCTGCTTGGCTGAACACAGAACGTTAGCGCATGTATTTCTGATTGGCTAAATGGATCAGTCTCGTCGCAAGACTTTAGCTAAAGCTTTGACATGTAGAATCTTGGGAAGCTGCAACCGACGACCTGAGACGTTAAGGCGACACCGTTCATATCAAACAAACTTAGTTCTACAACTCTTTAAAAGGTAGACTCGGCGGTATGACGTAGacgcagaaagtaaacagcacaGTGGGTAAATTTCCGCAACAACTTGACGCAATGAGGCTCAATTTCTCCGTTGTTTTTGGTCCTGTGCCAACAGCCTGAAGCGAACCTGCGCGCATGCGCAGATGGTGAGAGCGAAGTCTTGAAGTCGTTGCCGCACGTGGCAATGCCATTTCGCTGAGTTCACCTTAATAAAGACAGTTGCGTCGCGTCTCATTCTGTATTTGAACTGGGCTTAACAATTCTAACCCTCATCCTGAGTTTCTTAGCATAATAAGTTCCTCTCACTTTTATAAATACCATCAAGTACCCTATCCATATAATATCatttcatatacagtataatCTCATCTATTGTCATGAACAGCTATCCCTTTGGAAAGGACTAAAATAGTTTttaaattattaaaaaatatatcccCCATACAATAGGGGGGGCTCTGGGCCTATTCAACCTGCACTGGGAGATGGAGACAAGAACCATCGGAGCCCACAGACCCACCACACACATAAGCccaactacacacacaaacacattgctCCCTGTTCCAACTCCCTATAGCCAACACAGACCTTTACCTTCATAcccagcacgcacacacaaacacacccaggcTTGGTTCTGCTGACAGTAGAAACAGACATACACACTATGGCTTTCCAGAACTCTACTAGGGCCGTATAGACAGATCGGTGCCCTGGGGCTTGGCAGCTATTCAATAAACCAAGGGTGGGCATTCTTACTCTGCAGGCTTTGGCTCCAGCCAAGCTGAAATTCAACTTATCGACGCCTTGATTAAAGACTATGATTGGATGATTAGAAGAAGAATCAGTCCCATGTCTGTGATTTAGTGTTATCTGAACGCCACACCATCATGTACTTCTGTTGGGAGAAAAGGGATCCCATACAAAATTATCTGAGAGCAGCTTTACAGCATTAATGGGTATGTACCACAAATTAGTGGGGTCAGCGCTTGGTGGGGTCCtcattctctttctgtctcacacacacacaaacagacacacactctctctttccagCTAAGACTAGTGTAGCTGTGCTCacagtctctcactctctatctctccctatgtCTCAGATGAGCCTggcctctccctccatgtctggGGTCAGCTCACACACTCCAGTGAAGTGCATCTCCTTGCCTCTGGTTCCCTCAGACCTGGCACCTCTCTCCCCCAGGCAGGGTGAGGGTTGCTGGGCCATGGGGTCTGGGGAGGCCCGGGGGGCGCCGCCCGACCTTCTCTCCCTCAGGAAGATGTCAAGCCGACGCAGCATCTGCTTGGGGTTCTTTTTGGCAAACAGCTCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574443 lncRNA upstream 11397 39958868 ~ 40010338 (+) True G505984
TU574468 lncRNA upstream 39077 39976466 ~ 39982658 (+) True G505997
TU574427 lncRNA upstream 79980 39941163 ~ 39941755 (+) True G505972
TU574412 lncRNA upstream 96551 39924895 ~ 39925184 (+) True G505962
TU574405 lncRNA upstream 109810 39908373 ~ 39911925 (+) True G505955
TU574506 lncRNA downstream 23830 40050225 ~ 40050485 (+) True G506033
TU574508 lncRNA downstream 26063 40052458 ~ 40052693 (+) True G506035
TU574511 lncRNA downstream 29644 40056039 ~ 40056941 (+) True G506038
TU574512 lncRNA downstream 35192 40061587 ~ 40062614 (+) True G506039
TU574612 lncRNA downstream 139949 40166344 ~ 40166961 (+) True G506112
XM_021606459.2 mRNA upstream 100012 39916138 ~ 39921723 (+) False LOC110525934
XM_036980094.1 mRNA upstream 100012 39916138 ~ 39921723 (+) False LOC110525934
XM_021606458.2 mRNA upstream 100012 39916142 ~ 39921723 (+) True LOC110525934
XM_021606456.2 mRNA upstream 120210 39882777 ~ 39901525 (+) False LOC110525933
XM_036980100.1 mRNA downstream 120941 40147336 ~ 40154986 (+) False LOC110525942
XM_021606470.2 mRNA downstream 120943 40147338 ~ 40154986 (+) True LOC110525942
LOC118965025 mRNA downstream 133769 40160164 ~ 40165614 (+) True LOC118965025
XR_005052103.1 mRNA downstream 145925 40172320 ~ 40178096 (+) True LOC110525943
XM_021606472.2 mRNA downstream 158776 40185171 ~ 40191808 (+) True LOC110525945
TU574449 other upstream 58637 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 273255 39734784 ~ 39748480 (+) True LOC110525928
TU574236 other upstream 341704 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other upstream 341704 39674012 ~ 39680031 (+) True LOC110525927
TU574235 other upstream 343472 39674012 ~ 39678263 (+) False LOC110525927
TU574576 other downstream 170405 40196800 ~ 40203886 (+) True G506095
TU574667 other downstream 230672 40257067 ~ 40259050 (+) True LOC110525949
TU574816 other downstream 518468 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 539672 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 542331 40568726 ~ 40859522 (+) True fbxl17

Expression Profile