RNA id: TU574579


Basic Information

Item Value
RNA id TU574579
length 2009
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G506096
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40194588 ~ 40196747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagttaacTTCCACTTGGTGTTCTCAAACTTGAAGATCTCATCTCTGTTCAGGTTGGACTCGCTCAGTTTCAATTTGTGATCAGACTCGTGTTTCACTTTGATAAATGTAACCATATCTTTATCACTGAGCTTGTTCTGATCCTAGCCACTCTCACCAGGCTACGAAAGAGACTTTTGACCCAGACATGCCTTCATTGACAGAAGCCCCATTAATACTCTTGACACACTGCGCTCACGCTTGTCAAGCAATGCACTGTGTTCAAATGCATCAACTGGGAAAATGCTGTTAAATACACTAATTGTATATAACAGTTTAGTGAAAAGAAACTACTAGAAATAACATGTAATTCAGATGACATTGACCGCATGCGAGCAGACAACCAGATCAACTACCACACTCTAGTGGACAAACTAACATTGCAGCGGGGAGGTAAATGAATGACCTTATGTCTGACTGTAGCAAAGGATTTGACAAGTAAAACTCCAAAATGAATAACCCATCATTTTCAGAGTTCGGTCTTACATGAAATGCAAGATCAAATTGTATTACTAAGAGTAATAACATTTTGACAATCATGTGCCGACTTACTGGGGTTGCCATTGTTTCAATACGAAAAAGGGCTGTATTGGTCCAGATGTATGGGTGAGAGGCTGTATTAGATATACCTCTCGTAATCATGTCTGTTTTACAATAAGTGTGGATACTTTCATTTCCATCATATCAAATGAGTTACACCCACCATTCCAGCTTTACAGAAACTGGACACTCATGAGCTCTGCCGGCGACAGATATTTCCCAATAGACATTCCAACAGTTGCTAAACACAATCAATGCCATACATTTCTTTCCAACAATGAAATGCTTTATGGTTGATTGTGCTACATTTCTTGTGATGCAAAAGTGACGATTTTGATATCCTGTAATTGAGACCACCCAAATTTGTTTATTTTAACTCATGAAATTCATGAACAAAGTCACAAGATATTTAGAGTTGTTTGAGTAAATAAAGACCCACAGTGGGCGAAACAGTTACTGCATTAGAACAGAGCGCAGGAATTATTTTTCACATGACATTTTATTCCCTTCAACTGGATAATCTGCTGGACCGGCACAGTCTACCACGGCAACAGTCAAATTTTACCACAGCTCTCTAGGGTTGTACAATTTTATTTCTTCTTAGGAGAAATCTGTACATTGAGGTTCTGGCCTTCAGTGTTTCACATACATATAATATTAGGACAATGCGACAGACCGTAAGCACACTGAAGGATCAGGAGCAGTTTCGCTCTTTACTCAAAGCTGGACAGGAAGGTCAACACAATCTCCTTCAGTTTGGCGTCAGCTGTCGGTGAGATCATACCATCGGTCTGATGGTGGTGAGCAGGTCCTGGTGCTGGCTGAGGACGTGTACAAGGAAGGCCTTCTCAAACCTGGTGATCTTGGAAGGGTCCATCTTGTCCAAGTGACCTCTGACACCAGCGTAGATGACTGTCACCTGCTCCTCAATGGCCATGGGgcctgggggagggagagaaagtaaaataaaaatacatgtctCCCCAAATGAAGGAGTGGCCCTGGTTGACAACATACAAAATGTTAAACTTTATTAGCACGCTGGGTGGTGACACTCACAGTACTGTCCCTGTTTGAGCAACTCAGTGAGGCGGACACCCCTGTTGAGCAGCTGCTGGGTGGCAGCGTCCAGGTCAGAGCCGAACTGGGCAAAGGCAGCCACCTCACGGTACTGGGCCAACTCTAGCTTCATGGTACCAGCCACCTACACACAGTAAAGGACCACAATCGTATTATGGATTTAGGAGACTGATTCCAAGTGAGAAAATACTCTAGGGTAACTGGTGAATATCAGTCCCCTTAGAGCCCCAGGTCACACCTGCTTCATGGCCTTGGTCTGGGCAGCCGATCCGACTCTGgacacagacagacccacattgaTGGCTGGGCGGATACCTTTGTAGAACAACTCAGTCTCCAAGAAGATCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574584 lncRNA upstream 352 40193832 ~ 40194236 (+) True G506100
TU574639 lncRNA upstream 12201 40182170 ~ 40182387 (+) True G506129
TU574637 lncRNA upstream 13971 40180371 ~ 40180617 (+) True G506127
TU574612 lncRNA upstream 27627 40166344 ~ 40166961 (+) True G506112
TU574512 lncRNA upstream 131974 40061587 ~ 40062614 (+) True G506039
TU574583 lncRNA downstream 8173 40204920 ~ 40207158 (+) False LOC110525947
TU574582 lncRNA downstream 16167 40212914 ~ 40215438 (+) True LOC110525947
TU574668 lncRNA downstream 62423 40259170 ~ 40260881 (+) True G506157
TU574675 lncRNA downstream 72538 40269285 ~ 40271231 (+) True G506164
TU574676 lncRNA downstream 74577 40271324 ~ 40272651 (+) True G506165
XM_021606472.2 mRNA upstream 2780 40185171 ~ 40191808 (+) True LOC110525945
XR_005052103.1 mRNA upstream 16492 40172320 ~ 40178096 (+) True LOC110525943
LOC118965025 mRNA upstream 28974 40160164 ~ 40165614 (+) True LOC118965025
XM_036980100.1 mRNA upstream 39602 40147336 ~ 40154986 (+) False LOC110525942
XR_005052104.1 mRNA downstream 8156 40204903 ~ 40211735 (+) False LOC110525947
XR_005052105.1 mRNA downstream 8156 40204903 ~ 40211735 (+) False LOC110525947
XM_021606474.2 mRNA downstream 8156 40204903 ~ 40215454 (+) False LOC110525947
XM_021606476.2 mRNA downstream 8156 40204903 ~ 40215454 (+) False LOC110525947
XM_021606478.2 mRNA downstream 60247 40256994 ~ 40259050 (+) False LOC110525949
TU574449 other upstream 231490 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 446108 39734784 ~ 39748480 (+) True LOC110525928
TU574236 other upstream 514557 39674012 ~ 39680031 (+) False LOC110525927
TU574237 other upstream 514557 39674012 ~ 39680031 (+) True LOC110525927
TU574235 other upstream 516325 39674012 ~ 39678263 (+) False LOC110525927
TU574576 other downstream 53 40196800 ~ 40203886 (+) True G506095
TU574667 other downstream 60320 40257067 ~ 40259050 (+) True LOC110525949
TU574816 other downstream 348116 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 369320 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 371979 40568726 ~ 40859522 (+) True fbxl17

Expression Profile