RNA id: TU574675


Basic Information

Item Value
RNA id TU574675
length 1947
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G506164
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40269285 ~ 40271231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGTCTCAATAACTGTTAATCCATTTTATTCCTTTTCAGAACGTATTGCTTACATGAATATTCTATAGGGTGGATATAACGCAAGCACAGTGAATTTATAATGAAAAACCTCTGTAATTTTAAGCCTTTTACAGATATACCGGACCATCATATTTTAAAACTGATATGCCATATTTATGTTATACTGATGTAACATTTCATGACACGTTTAATAACTTGCATCTTCTCACAGAGAAGAAATTGCATAGGTCACAAAATTATGACAATGACAATATTGCGGTGGGTCACTGAGAATCTGTGTTTGGCTAACTATCCTGCATGTTGGCACAACTCATTCCATGACAAAGGCATTCTAAAAAGCATTCTAATTGGATAATTTGTCATACTTCTCACCTGAAGGACAAACACATGGATAATGTTTATTACACACATATTACTGCCCTATAAACTCTCTAAATCTATTCTGTGATGCAAAACAGTCTCAATGTTTCTCTCTAGACAGCAAAGCTTCTCAAGACAAAGGTATTTGTGAGAACGGATTTTTCCTTGGTGCTGGCAATCATGGCACGTTACTTCAGGCCCCATGCTACATTCCCTTCAATTAATCTTAATAACGCTTATGTACATCGGAATAATTTTTGTTTACTGGCAACCTCGGCTCTAAATACAAAGTTTACTCAATGATTGAAAGAAGCTAGTGATTAAACTGTTGAGCTACAGTGTACAGTCATGGGCCTTTAAGCCATGGAGACAATCTTGCTCCCTGACCAGTGCAAGAAGACtggaaaataaacaaacattgATGTTTCTGGTCAAGGTAGCTTGACATCAAAGCAGAGCagacatcctctctctccctctcagttgTGTCTCTGTTGTTTTTACTTCTTCCTCCCTCTACCTAGCTTCCCAAAAGCTTCTTAACGTTGTTTAAATGTGCCATACCTcatcttgagagaatgtcaaATGAGTCAGCCTTGGTGCCAGTTTATTTCTGCTTTTACTAACACTTCCACCAACCAAATAAGTCCCTTAGGAGAGCAGAAGCTGTCTACCTCAGAGAAGGCATCTTGGACAGTCTGAAGACAGTCCCTTCAATGTAAGTGTGGCATCCCTCTGACTCACAGAAACCTCACAATAATATGAGGACTGAGGAGTACTAGAGTAGCTGTTGAGAAAGTAACCGCTTCTGGGAATCCAAATAAACAAGACTTATATGCATTTCTCCTGTACTGTCTCATTGCTTAGCGACACATGAAGAGCCTGGTCTTTCACACATGACTGAGTGGTCTTTCCTGCCACACCAGAAAGGTCCCTGGTTAGATGTGTCGTTTCTCTGCTCCCGTCCTCTGTATTGCTCTGCCCTGATGAATAAGAACTTCGGGGGTTTTGGACAGAGGAAGTGCGGAACCCAAACTGCTCTCCTGTGTGATGACAGCTTCCTGTGTACGTCTCACTTCCTTCGGGCAGGTAGAGAACAGTCTGAGAGGTGCTGGACACCTCCCTCAGCTCACGGGATACCAGTGAGGGTGACTCTCGAGAGGAGATGATGGAGGGGCACTGGTGGCAGTTCTGTCTCTGCTGCCGCCGTGCTCCTATCTGACAGAACAGACATTTGATCTGCTCAATGAGCTTGAGGAGCATGGCCTTGCGGAGGAGGATGTAGATCCAGGGGTCCAGGATGGGGTTGAAGGAAGCGAAGCGGATCGCCCGCAGATCTGGGTTCTTTTCCAGTCTCAGCTCCACCGGAGTCTTATACAGCTGGTTCAGAAACACCTGCACCTGCAAGGCAGAGGTAATTAATGGAATTTAATCATCTTATTTTGCCCAGCTGAGTTGAATTGACTGATATTTATGTTTTATACAGCTTGCTGACACCTGCAAGATAAATGTAATTGAATCtaattgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574668 lncRNA upstream 8404 40259170 ~ 40260881 (+) True G506157
TU574582 lncRNA upstream 53847 40212914 ~ 40215438 (+) True LOC110525947
TU574583 lncRNA upstream 62127 40204920 ~ 40207158 (+) False LOC110525947
TU574579 lncRNA upstream 72538 40194588 ~ 40196747 (+) True G506096
TU574584 lncRNA upstream 75049 40193832 ~ 40194236 (+) True G506100
TU574676 lncRNA downstream 93 40271324 ~ 40272651 (+) True G506165
TU574678 lncRNA downstream 2821 40274052 ~ 40274270 (+) True G506167
TU574680 lncRNA downstream 7791 40279022 ~ 40279306 (+) True G506169
TU574681 lncRNA downstream 8154 40279385 ~ 40279614 (+) True G506170
TU574690 lncRNA downstream 19062 40290293 ~ 40290528 (+) True G506179
XM_021606478.2 mRNA upstream 10235 40256994 ~ 40259050 (+) False LOC110525949
XM_021606474.2 mRNA upstream 53831 40204903 ~ 40215454 (+) False LOC110525947
XM_021606476.2 mRNA upstream 53831 40204903 ~ 40215454 (+) False LOC110525947
XR_005052104.1 mRNA upstream 57550 40204903 ~ 40211735 (+) False LOC110525947
XM_036980104.1 mRNA downstream 15235 40286466 ~ 40309855 (+) False LOC110525953
XM_036980105.1 mRNA downstream 15235 40286466 ~ 40309855 (+) False LOC110525953
XM_021606484.2 mRNA downstream 36999 40308230 ~ 40309855 (+) False LOC110525953
XM_021606482.2 mRNA downstream 37025 40308256 ~ 40309855 (+) True LOC110525953
XM_021604987.2 mRNA downstream 43632 40314863 ~ 40317433 (+) True LOC110525028
TU574667 other upstream 10235 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 65399 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 306187 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 520805 39734784 ~ 39748480 (+) True LOC110525928
TU574237 other upstream 589254 39674012 ~ 39680031 (+) True LOC110525927
TU574816 other downstream 273632 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 294836 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 297495 40568726 ~ 40859522 (+) True fbxl17
TU576412 other downstream 1198320 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1857994 42129225 ~ 42131940 (+) True G508559

Expression Profile