RNA id: TU574676


Basic Information

Item Value
RNA id TU574676
length 1328
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G506165
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40271324 ~ 40272651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgatgTATTGCCAAATTGTTCAACAAATCATGGCTAAGCATTTTATGGATCTAGCTGTCTGAAGGCACACCTGTCCTTATGGAGACTGATGTGAGCAGCATACAAAGCAGAATATGCAATATAGGCCTACACTACTATGCAAATCAGCTATGAGAAAACTATTCTAATGTCAGGTTGGGACTATTAACAACTCATGAAGTCACAATGACTTACAGGCATTGTGCGTAAAATATCAAAtcgtgtgtacatgtgtatctTGTGCGTAAATAATTAAAATAGTCTTTGTGCGATTAGGAAAATGTGTAAAATGGTTCTCAAAGTGAGAAGAGAAACTTACAACTAGTGGAATGGAGCATATGAGCACCACCGCTGAGGTGCATATGAGTACAATCACCATCTGGATCTCCGCGCCGGCCAGATTCCCGAAGTTGCGTCTCCTTCTTGGGTCTGTGTTTCGCCCTGGGTCTGTCCCCAACGACATCCTCCGAACGAACTGCCGGTGCATCCGGATCAAAGCCCCGCACACCAGAACGTTACAGATCACCGTGGCCAGAATTAGAATCGAACTTGATCCCGCGTAGATGTAAGAAAATGTGGCATCAGTACTCACGTTGCTCCGCCACTCTATGAAGCACCAGGTTTGTGGGTACTGCTTTTTGACTTGTCCCAGACCCATACTAGGCATAGCGCAGAAAAGCGCATTGGAGATGTAGATAGCCAGAAGAGTCAACCCCGCCAGTCTCTGATCCACATAGTCGTTGTAGAAATACGCATGGTTTATCGCCAAGTATCTCTCTACGGACATTGCGCATATGATGCTGAGCCCCGctaaagagaagaagaggaggatgaatcCGAAATACTGGCAGAGTGGGTCCCCGCCTGGCCAAGATCCTTTCACATAAGTGGCGATGGTGACTGGACTGGCCAGGAGGGTCCCCAAAAGGTCCGTAACTGCCAGACCGCAAACCAGCGTGTAGAACGTGGTCTCCTTCTGCTCTTTCCTGGACTTGCAGAGCACCACGATGGCGATTACATTTCCCACCACTCCGAAAATAAACATGATGGAAGGTATAGTCGGGACCATGGTCCTCCCGGTCACAGTATTGTTACTCATTGTAGTATGTCCAgattatgtatatttttttaaatacttcaTTCACATTATAAGCTATccttcatttttttttacaagtaaAGACTACTGTAGATGCTTTAGGCATATTATCTACATAAATTAAACTTATCAAACATGATTGAAATATTCATGCTGAATGTGAGCTGAACCGATCTACTCACAACAGAAGTTAGAACGCCTTTAAAACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574675 lncRNA upstream 93 40269285 ~ 40271231 (+) True G506164
TU574668 lncRNA upstream 10443 40259170 ~ 40260881 (+) True G506157
TU574582 lncRNA upstream 55886 40212914 ~ 40215438 (+) True LOC110525947
TU574583 lncRNA upstream 64166 40204920 ~ 40207158 (+) False LOC110525947
TU574579 lncRNA upstream 74577 40194588 ~ 40196747 (+) True G506096
TU574678 lncRNA downstream 1401 40274052 ~ 40274270 (+) True G506167
TU574680 lncRNA downstream 6371 40279022 ~ 40279306 (+) True G506169
TU574681 lncRNA downstream 6734 40279385 ~ 40279614 (+) True G506170
TU574690 lncRNA downstream 17642 40290293 ~ 40290528 (+) True G506179
TU574696 lncRNA downstream 21197 40293848 ~ 40294017 (+) True G506185
XM_021606478.2 mRNA upstream 12274 40256994 ~ 40259050 (+) False LOC110525949
XM_021606474.2 mRNA upstream 55870 40204903 ~ 40215454 (+) False LOC110525947
XM_021606476.2 mRNA upstream 55870 40204903 ~ 40215454 (+) False LOC110525947
XR_005052104.1 mRNA upstream 59589 40204903 ~ 40211735 (+) False LOC110525947
XM_036980104.1 mRNA downstream 13815 40286466 ~ 40309855 (+) False LOC110525953
XM_036980105.1 mRNA downstream 13815 40286466 ~ 40309855 (+) False LOC110525953
XM_021606484.2 mRNA downstream 35579 40308230 ~ 40309855 (+) False LOC110525953
XM_021606482.2 mRNA downstream 35605 40308256 ~ 40309855 (+) True LOC110525953
XM_021604987.2 mRNA downstream 42212 40314863 ~ 40317433 (+) True LOC110525028
TU574667 other upstream 12274 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 67438 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 308226 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 522844 39734784 ~ 39748480 (+) True LOC110525928
TU574237 other upstream 591293 39674012 ~ 39680031 (+) True LOC110525927
TU574816 other downstream 272212 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 293416 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 296075 40568726 ~ 40859522 (+) True fbxl17
TU576412 other downstream 1196900 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1856574 42129225 ~ 42131940 (+) True G508559

Expression Profile