RNA id: TU574780



Basic Information


Item Value
RNA id TU574780
length 209
lncRNA type intronic
GC content 0.36
exon number 1
gene id G506254
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40477015 ~ 40477223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCTATTTCATTTGTCTTCTTTCATTGCTCTGGAAACCAATCAGAAAATGATGTGCACTAAAGATGGTATTGTAGCCACACAAATACAATAGAAGACCATTGTCGATCTCATCGGAAACACTGATCACAACCTTTATCTCCTAAATTATGTCGCTGGTGTCATTTTGTTAGAATTTTGGAATATATAAGGTTTTTACCAGTTTCGAGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU574777 lncRNA upstream 2876 40473106 ~ 40474139 (+) True G506251
TU574776 lncRNA upstream 4588 40472001 ~ 40472427 (+) True G506250
TU574719 lncRNA upstream 66036 40409253 ~ 40410979 (+) True G506198
TU574739 lncRNA upstream 70130 40395345 ~ 40406885 (+) True G506216
TU574725 lncRNA upstream 141467 40334257 ~ 40335548 (+) True LOC118965077
TU574775 lncRNA downstream 13355 40490578 ~ 40490918 (+) True G506249
TU574774 lncRNA downstream 14123 40491346 ~ 40491768 (+) True G506248
TU574773 lncRNA downstream 14804 40492027 ~ 40493232 (+) True G506247
TU574787 lncRNA downstream 26891 40504114 ~ 40506084 (+) False LOC110525959
TU574788 lncRNA downstream 26891 40504114 ~ 40506084 (+) True LOC110525959
XR_002473848.2 mRNA upstream 1107 40469471 ~ 40475908 (+) True LOC110525958
XM_036980110.1 mRNA upstream 24853 40449567 ~ 40452162 (+) True LOC110515135
XM_036980109.1 mRNA upstream 36104 40438659 ~ 40440911 (+) True LOC110525956
XM_021608082.2 mRNA upstream 59571 40414867 ~ 40417444 (+) True LOC110526900
XM_021604988.2 mRNA upstream 104254 40370165 ~ 40372761 (+) True LOC110525029
XM_036980112.1 mRNA downstream 23434 40500657 ~ 40505498 (+) False LOC110525959
XM_036980111.1 mRNA downstream 23434 40500657 ~ 40506112 (+) False LOC110525959
XM_021606493.1 mRNA downstream 40368 40517591 ~ 40519539 (+) True avp
XM_021606494.2 mRNA downstream 43751 40520974 ~ 40524282 (+) True ccl27a
XM_036980113.1 mRNA downstream 50615 40527838 ~ 40533844 (+) False slc35d2
TU574667 other upstream 217965 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 273129 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 513917 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 728535 39734784 ~ 39748480 (+) True LOC110525928
TU574237 other upstream 796984 39674012 ~ 39680031 (+) True LOC110525927
TU574816 other downstream 67640 40544863 ~ 40547513 (+) False G506281
TU574820 other downstream 88844 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 91503 40568726 ~ 40859522 (+) True fbxl17
TU576412 other downstream 992328 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1652002 42129225 ~ 42131940 (+) True G508559

Expression Profile