RNA id: TU574816


Basic Information

Item Value
RNA id TU574816
length 2093
RNA type TUCP
GC content 0.42
exon number 2
gene id G506281
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40544863 ~ 40547513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGCATTTAATTTTAGAAAGCTGGTATACTCCATGTGCTCCGAGCAGATATATAATGCACGATAATTATGAATGAGATGAGGCCCCTTTAGGACCATTTTGTATGTAAGACTGATTACAATTGATAGCATGGTTGATCATAACAAGTACAAAAATATTTACAAAgtacaaatacatttttcagtATATCAAAATGTTGACTTATTTACAGTTTAAGTACAGCAGCTCAACAAAAAAAGACAACCAACTAGAAGCTTCACTGGAGAATGAAAGAAAGCTGGAGCATATTAAGGGTGCTATTCAGTCTGCGTCGCTGAAGCGCTAGAAACGTAAAGATCATTTCTGATTGAACGGACATATGCagagtttaccgtgaatgcagtgtctgctaacgcgggaacattgccATTCAATTTCAATCAATCGGGAACTTTGAACTTcccgcgatacggattgaatagagccaaGTGAAATACAACAAGCGAAATTAGGATTTACAACTCTGGAAAAACCattgattatttaaaaaaaaaaagagggtgGCATTGTATTACTTCTGTGCATTACATTTCTGTCTATAACATTCTGAAAGATGCTCCCCAAAGAGCATACCCCCTAGAGTAGACATGGTGCCGACATGAGCTTTTCCGACATGTTCAAGAGGGCCGACATGAGCTTTTCACAAATGATTTCATCTACAAAACACCTCAACTTCCAAACAGCTGGACATGACCTGATCTAGATCATACAACAGGTTAAGAAAAGTGGACGGTGCCTACCTCTGGAGGACCTACACCAAAAAAGCAGATTGACAGTCTGATGGTTCAGGATCAGCCTGGATTGCTATGGCAACCTTCTACTAGTATGTAAACAAGCAGGCAACAAATGTGtgaaatggaactctattcccatTACTTATGGCCAGGACTAATGTATAGAGAACAGGGTTTCATTTTAAGATGCACACAACCTTTTTTAAATTTTCTTCCACGATAAACAGTGAAATATACAATAAAAGAAGTGCCTTTTGATAAAGAGAGTTGGCAAATTAATTCCAAACCAACCAAACATGGTTTACATCTTAATCATATCTGATAACTCGTTCTTCCCATTCACAATCAGAGGCATCATTTCCTCATCGAACATCATCCCTTTATCAAAAATCGACTGGACTGgttcaagaaaaaaaaaaaaaaacagtccctTTTAAGAAATGAAAACAAAATCTCCATTTTTAGGAGCTGTAGGGTAGACTTCTACAGGAGTCCACTCTTAGAATTCCGGGACCGGAGGCTCAGCGCAGTAGAGGAGCTCTAGCTTTTGGTATGGAGTGTAAAGAGCTGGAGAGACTGTTCAAGTGTTTGAGCCGGAGTGTCGGAAGCCTAGAGTACAAACAGATATAGAAGGCGTTTGCTCATATGAAATGTAAAGTTAAGCAGACCCTTGGTGTGTGGGGGACCCGcagagtaggagagagtgaggTTGAGCCCAGAGAAAGGGTTGAGGAGGGGCTTGCCTTCCGAGGGGCCTGCAGCATGTTTAGGTTGGGCAGGTTGACTGTGTCTCTACGGCAACAACTGGGCTCACGGCACACTGGCTCTCTGTCACTGGTCACTACATGCATGCTGTCTAGAGACCTGGCTAGTCTGGAGTGGCACAGGGAGCTGGCAGAGGAGGGAAGGGGTTCATCGAGTCATCATAAACCATGTATGGCTAAGGCTCATTCTGTCCAGTTTACTTCACAGAAGTAACTATTTTCTGTATgactgagtatatataaccttcaaACATTTGACAGAATATTCAGCTAACAAATATGAGAAAGAGAGCAAACTAGATCAGCATTACCTCTGACAAATCCTAACTTGAGTTACCCACACCGTATACAGACTTTCACATTAATATTGCACTGCTGTCGATGAAAGTACTAGTTGGAATTCAATAGTACGGCTTATTGGAGACATTGACACTAACCTGCCCCCCACACTATTGGCAGGCAGTGAGGTTCTGGTTCTCTTCCTTTTCTCGGAGGCATcagggagatgggaggggttcACCACAGCTTTACAGCTCTGCCCACTGGACTGAAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU574814 lncRNA upstream 3960 40540501 ~ 40540903 (+) True G506280
TU574811 lncRNA upstream 12231 40532095 ~ 40532632 (+) True slc35d2
TU574808 lncRNA upstream 12308 40532095 ~ 40532555 (+) False slc35d2
TU574787 lncRNA upstream 38779 40504114 ~ 40506084 (+) False LOC110525959
TU574788 lncRNA upstream 38779 40504114 ~ 40506084 (+) True LOC110525959
TU574876 lncRNA downstream 90320 40637833 ~ 40639089 (+) True G506336
TU574923 lncRNA downstream 152547 40700060 ~ 40700389 (+) True G506382
TU574965 lncRNA downstream 216976 40764489 ~ 40766041 (+) True G506417
TU575020 lncRNA downstream 313577 40861090 ~ 40940073 (+) True G506471
TU575065 lncRNA downstream 370476 40917989 ~ 40925687 (+) True G506511
XM_036980113.1 mRNA upstream 11019 40527838 ~ 40533844 (+) False slc35d2
XM_021606496.2 mRNA upstream 11019 40528317 ~ 40533844 (+) False slc35d2
XM_021606494.2 mRNA upstream 20581 40520974 ~ 40524282 (+) True ccl27a
XM_021606493.1 mRNA upstream 25324 40517591 ~ 40519539 (+) True avp
XM_036980111.1 mRNA upstream 38751 40500657 ~ 40506112 (+) False LOC110525959
XM_036980121.1 mRNA downstream 21124 40568637 ~ 40886427 (+) False fbxl17
XM_036980122.1 mRNA downstream 21125 40568638 ~ 40671271 (+) False fbxl17
XM_036980120.1 mRNA downstream 21128 40568641 ~ 40886427 (+) False fbxl17
XM_021606509.2 mRNA downstream 21133 40568646 ~ 40886427 (+) False fbxl17
XM_036980124.1 mRNA downstream 427866 40975379 ~ 41084448 (+) False efna5b
TU574667 other upstream 285813 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 340977 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 581765 39962652 ~ 39963098 (+) True G505988
TU574282 other upstream 796383 39734784 ~ 39748480 (+) True LOC110525928
TU574236 other upstream 864832 39674012 ~ 39680031 (+) False LOC110525927
TU574820 other downstream 18554 40566067 ~ 40566429 (+) True G506285
TU574791 other downstream 21213 40568726 ~ 40859522 (+) True fbxl17
TU576412 other downstream 922038 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1581712 42129225 ~ 42131940 (+) True G508559
TU577938 other downstream 2019592 42567105 ~ 42569384 (+) False G509160

Expression Profile