RNA id: TU574876



Basic Information


Item Value
RNA id TU574876
length 320
lncRNA type intronic
GC content 0.44
exon number 2
gene id G506336
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40637833 ~ 40639089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGcaacctccctctccttctcaccccaTCTTTTCATTAGTTTACATTTTGAAAGAAGAGTTCTaatattttttacttattttatCTCGTACCTGTGTTTTGTTTCTTGCATACTGTCTCATAATGGTTGTTCTACGTTGTTGCCACAGTAGGTACCACAAATGCTCACCGGTTGTACCCATAAAGAGGCTTATGGAAATGTTTTTTCCTCCCtacacctctacccctctctcggTCTCCACCTCTTTCTTTACCCCGCTCCTCATCCCTCTGCTTGGGGAGCGATAGAATGAGGAATCTGGCACCAGAGATgtcctcctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU574815 lncRNA upstream 90320 40546313 ~ 40547513 (+) True G506281
TU574814 lncRNA upstream 96930 40540501 ~ 40540903 (+) True G506280
TU574811 lncRNA upstream 105201 40532095 ~ 40532632 (+) True slc35d2
TU574808 lncRNA upstream 105278 40532095 ~ 40532555 (+) False slc35d2
TU574787 lncRNA upstream 131749 40504114 ~ 40506084 (+) False LOC110525959
TU574923 lncRNA downstream 60971 40700060 ~ 40700389 (+) True G506382
TU574965 lncRNA downstream 125400 40764489 ~ 40766041 (+) True G506417
TU575020 lncRNA downstream 222001 40861090 ~ 40940073 (+) True G506471
TU575065 lncRNA downstream 278900 40917989 ~ 40925687 (+) True G506511
TU575086 lncRNA downstream 309586 40948675 ~ 40948992 (+) True G506531
XM_036980113.1 mRNA upstream 103989 40527838 ~ 40533844 (+) False slc35d2
XM_021606496.2 mRNA upstream 103989 40528317 ~ 40533844 (+) False slc35d2
XM_021606494.2 mRNA upstream 113551 40520974 ~ 40524282 (+) True ccl27a
XM_021606493.1 mRNA upstream 118294 40517591 ~ 40519539 (+) True avp
XM_036980111.1 mRNA upstream 131721 40500657 ~ 40506112 (+) False LOC110525959
XM_036980124.1 mRNA downstream 336290 40975379 ~ 41084448 (+) False efna5b
XM_036980123.1 mRNA downstream 336297 40975386 ~ 41084448 (+) True efna5b
XR_002473854.2 mRNA downstream 543759 41182848 ~ 41188172 (+) True LOC110525969
XM_021606522.2 mRNA downstream 819198 41458287 ~ 41461918 (+) False LOC110525974
XM_036980132.1 mRNA downstream 819216 41458305 ~ 41460763 (+) True LOC110525974
TU574820 other upstream 71404 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 90320 40544863 ~ 40547513 (+) False G506281
TU574667 other upstream 378783 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 433947 40196800 ~ 40203886 (+) True G506095
TU574449 other upstream 674735 39962652 ~ 39963098 (+) True G505988
TU576412 other downstream 830462 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1490136 42129225 ~ 42131940 (+) True G508559
TU577938 other downstream 1928016 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 1928159 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 3018379 43657468 ~ 43658493 (+) True G510416

Expression Profile