RNA id: TU575081


Basic Information

Item Value
RNA id TU575081
length 1832
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G506526
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41084491 ~ 41086322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTCATAAGAAACTCTCTATTTTCTTCCAGATATTTAAGTGGTCTTTCTCCTTCAGTGATTTTGTAAAAGTTGATGTTGGAAGCGGGAGAGACTGTTTCCCTCTTAAAACTGTCAAATAAGATGCCAAATCCTTGTTTTTGACACTTAGTGATTCTTGTTTTCCTATGACTTCTGACATCCCTTTACGTCATGCTGATCCATTGCACCGCTCACATACGCAAATAGGcagacacacctacacacacacacacacacttttacactgaCAGTTGAGCAGTAGCTCTTTTGGTAGGTTGTAAAGCAGTAATACACAGTACGTAATGGTGGTTTTAGCTCGTATGTAGACAGAGAACAAGGGAGCAGATGTGGGTAGTACTCGCATCTCCTAGTCTTTACAGATTCACCTCTCTCGGGACCAGGTGGATGTAGATAGGTGTGTTTTTGTTGGGTTTTAGAGATAGAGGAGTATCCTAGGTATCCGTTGAGATACAGTGTAGAACATGTTTAGTAGGAGGGTATGGGAATGAGTGAGCTGAGTCGGTTGAACTATTGTTGAGTCCCTTGGCCTCTTTGATGAAGGTTTGCTCTCATTTGccgtccttgtgtgtgtgtagagaaagGCCTGGTCCAGTCAAGAAAATGTTGCCTTGGCACACAAATAAAAGACAAACACTTTCGTTCAACACTTTGTGGACCGTCGCTAGAATAAAATATCAATTATTTGAACGATTACTCAATTTAAGAGCGGCAGACATGCAGGTCATTTTGTGCTTCATTCATTGACTTCATCTGTAATTGCTCCTTTGTGCCAGATGATGCATTGTCAATAATAACAAGACTCTTAACTTGAAGCTTGAACCCCTCACTGATTGCAGTTTAGATTCAGTTTGttatatattaaaaaaacaaacatttgagaGTTGCTCCTTACATACTATGCCTTCTCTTGCTAATGTTCTGAATGTCATCTATGGTTACAACAAAGACATGTGCGTATCAGAGCGTGGAGAGATGTTGCGTTGTTGAAAGGCTGTGTGGAGAGAAGAATGTGACTCTAGCTCTGGGGTCTGTGTCAACAGCTAAGAAAGGTGCCTCTCTCACTGTTTTCAGAATACCACTCCCCTACCACGCAACTATATATTTTCTTCCCCCTACAATTGCTTATCATTAGTTCACTTAGATATGCCGCAAAACTTCACATGTGGAATTGTCTCTGAGCATAGCTCTTCAGTATACCCATTAAGGAGGCATCAACAGTGTTGCTCTCCTGTATTTTTCCAGTCTTTACCACTCATGCATAACCACAACTTCAACTCTAACCACAGATTCAGCAGCCATTAGTCAAATAGCGCTCAGACGCCGTAGCTACAGTCCATTATAGCAGGCGGCCTGTTCTCCACTGACCAGACCACATTCATTCTACAACCATATAATTCAAATTTAATCAACTCGCAACGAGTATCTTAATAGAGAAAATATCCCTTAACATCGAGTTGGAATGCAGAGCAGTTTAGGCCACGTTTTGTTTATCCTGTATTTCTACATTGCACTGTTCTATAATGACATTCAACTTCCTTAGACTCACACAGGCTCAGATGGTAGATTAACATAGTTGGAGAGATTTAAAATGGAAACACTGTTACAGATACATGAATTAGGTCTGTTGACACAGGTTTCCTTTCAGAGGacggagcgagagagcgagagagagagagacagagagagagatgcatgccTAGTTACCGCTCCTACTGTTACGGGCTTTAGTGACTCTTTAATGAGGTTCAAAATGAGAGGAATGCGGACTCCATGTTGTGGAGTAAAGGGAGT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU575086 lncRNA upstream 135499 40948675 ~ 40948992 (+) True G506531
TU575020 lncRNA upstream 144418 40861090 ~ 40940073 (+) True G506471
TU575065 lncRNA upstream 158804 40917989 ~ 40925687 (+) True G506511
TU574965 lncRNA upstream 318450 40764489 ~ 40766041 (+) True G506417
TU574923 lncRNA upstream 384102 40700060 ~ 40700389 (+) True G506382
TU575079 lncRNA downstream 95 41086417 ~ 41088951 (+) True G506524
TU575158 lncRNA downstream 3577 41089899 ~ 41090182 (+) True G506602
TU575180 lncRNA downstream 32742 41119064 ~ 41119403 (+) True G506622
TU575185 lncRNA downstream 37960 41124282 ~ 41124489 (+) True G506627
TU575193 lncRNA downstream 52797 41139119 ~ 41139340 (+) True G506635
XM_036980124.1 mRNA upstream 43 40975379 ~ 41084448 (+) False efna5b
XM_036980123.1 mRNA upstream 43 40975386 ~ 41084448 (+) True efna5b
XM_036980121.1 mRNA upstream 198064 40568637 ~ 40886427 (+) False fbxl17
XM_036980120.1 mRNA upstream 198064 40568641 ~ 40886427 (+) False fbxl17
XM_021606509.2 mRNA upstream 198064 40568646 ~ 40886427 (+) False fbxl17
XR_002473854.2 mRNA downstream 96526 41182848 ~ 41188172 (+) True LOC110525969
XM_021606522.2 mRNA downstream 371965 41458287 ~ 41461918 (+) False LOC110525974
XM_036980132.1 mRNA downstream 371983 41458305 ~ 41460763 (+) True LOC110525974
XR_005052108.1 mRNA downstream 429417 41515739 ~ 41522572 (+) False LOC118964869
XM_021606527.2 mRNA downstream 484682 41571004 ~ 41677673 (+) False oxct1a
TU574791 other upstream 224969 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 518062 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 536978 40544863 ~ 40547513 (+) False G506281
TU574667 other upstream 825441 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 880605 40196800 ~ 40203886 (+) True G506095
TU576412 other downstream 383229 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1042903 42129225 ~ 42131940 (+) True G508559
TU577938 other downstream 1480783 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 1480926 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 2571146 43657468 ~ 43658493 (+) True G510416

Expression Profile