RNA id: TU576048


Basic Information

Item Value
RNA id TU576048
length 614
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G507417
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41099270 ~ 41113925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttacgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcagctcaggactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgaaagtggggatggtgtgttcagctgtgttgcttttacggcaaacataacgttttgcattgttgccaaaaagttcaatttttgtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatgtctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatctgtcttctccttgtatgagctgaaagtttagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576047 lncRNA downstream 2171 41096871 ~ 41097099 (-) True G507416
TU576014 lncRNA downstream 10302 41084490 ~ 41088968 (-) False G507387
TU576015 lncRNA downstream 10302 41086453 ~ 41088968 (-) True G507387
TU576017 lncRNA downstream 12926 41084490 ~ 41086344 (-) False G507387
TU576026 lncRNA downstream 52364 41046332 ~ 41046906 (-) True G507396
TU576069 lncRNA upstream 15407 41129332 ~ 41129562 (-) True G507437
TU576244 lncRNA upstream 137935 41251860 ~ 41252065 (-) True G507605
TU576265 lncRNA upstream 154098 41268023 ~ 41268325 (-) True G507626
TU576537 lncRNA upstream 254035 41367960 ~ 41368929 (-) True G507887
TU576544 lncRNA upstream 264847 41378772 ~ 41379042 (-) True G507894
XR_005052107.1 mRNA downstream 489360 40607825 ~ 40609910 (-) True LOC118964868
XM_036980118.1 mRNA downstream 537653 40546203 ~ 40561617 (-) False LOC110525965
XR_005052414.1 mRNA upstream 126098 41240023 ~ 41240834 (-) True LOC118965078
XR_002473698.2 mRNA upstream 184201 41298126 ~ 41299982 (-) True LOC110525030
XM_021606514.2 mRNA upstream 276745 41390670 ~ 41392415 (-) True gadd45ga
XM_036980125.1 mRNA upstream 282316 41396241 ~ 41403845 (-) False creb3l3l
XM_036980126.1 mRNA upstream 282316 41396241 ~ 41404585 (-) False creb3l3l
TU575676 other downstream 556941 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 1209339 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 1261110 39837648 ~ 39838160 (-) True LOC110525932
TU575254 other downstream 1334494 39763291 ~ 39764776 (-) True LOC110525929
TU575200 other downstream 1474926 39623685 ~ 39624344 (-) True G506641
TU576563 other upstream 307099 41421024 ~ 41461922 (-) True G507906
TU576567 other upstream 321050 41434975 ~ 41439014 (-) True znf131
TU577033 other upstream 706930 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 1030172 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 1258516 42372441 ~ 42403220 (-) False G509034

Expression Profile