RNA id: TU575180


Basic Information

Item Value
RNA id TU575180
length 340
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G506622
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41119064 ~ 41119403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCAGATGATAGTGAGGCATCTAACTCAATTGAAGAGGGACGAGAAGTTCAAGGAGAGGTGGAAACTTCGGAGGAAATAGAAGGACCAGGGATAAGAAGATCTCAGAGAGTAAAGTAAGCTCCTGTACTACTTTGTTAAACCTGGAGTTCCAAGTATAGCCCCAGTTGTCAGATATTGTTCCACACTATACAAGTGGATCGGATAAGGGAAACACAAATGTATCTGCTTTTCAATTATCTAACAAGGTTTGTCTCAGCTGTAGGTTGTAGACAGAGTTAAGAGTTGACACGTTTACTTGTTACTTATTGCATTTCACTTGTGTGTTTACAAGTCATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU575158 lncRNA upstream 28882 41089899 ~ 41090182 (+) True G506602
TU575079 lncRNA upstream 30113 41086417 ~ 41088951 (+) True G506524
TU575081 lncRNA upstream 32742 41084491 ~ 41086322 (+) True G506526
TU575086 lncRNA upstream 170072 40948675 ~ 40948992 (+) True G506531
TU575020 lncRNA upstream 178991 40861090 ~ 40940073 (+) True G506471
TU575185 lncRNA downstream 4879 41124282 ~ 41124489 (+) True G506627
TU575193 lncRNA downstream 19716 41139119 ~ 41139340 (+) True G506635
TU576271 lncRNA downstream 152499 41271902 ~ 41272129 (+) True G507632
TU576273 lncRNA downstream 154261 41273664 ~ 41273958 (+) True G507634
TU576275 lncRNA downstream 155692 41275095 ~ 41275435 (+) True G507636
XM_036980124.1 mRNA upstream 34616 40975379 ~ 41084448 (+) False efna5b
XM_036980123.1 mRNA upstream 34616 40975386 ~ 41084448 (+) True efna5b
XM_036980120.1 mRNA upstream 232637 40568641 ~ 40886427 (+) False fbxl17
XM_021606509.2 mRNA upstream 232637 40568646 ~ 40886427 (+) False fbxl17
XM_036980122.1 mRNA upstream 447793 40568638 ~ 40671271 (+) False fbxl17
XR_002473854.2 mRNA downstream 63445 41182848 ~ 41188172 (+) True LOC110525969
XM_021606522.2 mRNA downstream 338884 41458287 ~ 41461918 (+) False LOC110525974
XM_036980132.1 mRNA downstream 338902 41458305 ~ 41460763 (+) True LOC110525974
XR_005052108.1 mRNA downstream 396336 41515739 ~ 41522572 (+) False LOC118964869
XM_021606527.2 mRNA downstream 451601 41571004 ~ 41677673 (+) False oxct1a
TU574791 other upstream 259542 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 552635 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 571551 40544863 ~ 40547513 (+) False G506281
TU574667 other upstream 860014 40257067 ~ 40259050 (+) True LOC110525949
TU574576 other upstream 915178 40196800 ~ 40203886 (+) True G506095
TU576412 other downstream 350148 41469551 ~ 41471408 (+) True G507768
TU577295 other downstream 1009822 42129225 ~ 42131940 (+) True G508559
TU577938 other downstream 1447702 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 1447845 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 2538065 43657468 ~ 43658493 (+) True G510416

Expression Profile