RNA id: TU576563


Basic Information

Item Value
RNA id TU576563
length 1817
RNA type TUCP
GC content 0.49
exon number 2
gene id G507906
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41421024 ~ 41461922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATATGAGTGCATCAACCATCTTTATTCGGCATTTCTTACATGCTACACCACCTAACAGTCCACAGTCAGAATGAACGTGTTCTGTACAAAGCATCAGGTGTTCTAGGTGACAGTTGTCTTCCCCTAGAGCCCTTCATTAAGTACAGAATGGATTCAAACAATCGTTCAATCTTTTCTGTTTACCCACCTCTCATTCTAGACGGTTTCTTTTGCTAGTTAAAAAGTGTTCCCGATCATTTGTTAGTCGAAAAAAAGTGTTCACTATTTTGTTAGTTGAAAACAGTTCTCTGTTTTGCTAGTTCACAAAGAGTGCATTATACATATGTGCAATATTGCCAAACTAAAATAACTCAGTGACTAACTAAACACACATCCTCACAGCTGTAAGCAATGGATACTGACGTTTGAAAGCTTTATCTACATAACACACTACTGCTCCAAAACACCTGAGAGTTAATTAAATTGCAAAAGTAAAATGTTAGTGAGATCCCAATTTTTTTGGAGGcctaataaaaaaaatctgaactatCAATAATGTATTTGGACCAAATTGGTTTTGCTAACACTGAGTATAACAACTTTGGTTCAGGTCTATCTCTCCCAGCCATCATGCCAGTTTGTTCAGCATAGGCAACTACTACTACATACTCCTTCCAAAGCTCTCGATATTTTGAACTTTAGGGGGTGGTCATATTATAAGTCCCTCCCGTTCCCCTCTCCCCAGCCGGACATCAGACAGACGCCACTAGAGCGTAGTTTCTGCGCCTGCCTTCACTGTGGATGGAGGGAGCAAAACAGAGCAGGAGAAACGTTAACATAATCACCCCATACACTCCTGGGAGGGTGACACCAACGCACTGACAGAGATGGTGGAGGACACCCACCTTGCCATCACTATGGTCACATCTCAAATGCAATCCTTTCCCCCATATCGTAATGGGTTTAGGCTTGGCATTCACCTACCACACCCAATGTgtgtcctcccatctctccctgtcaGGGGTGGCTTCACGGTCCCAGGGTAATACTAGTTGGTAAGATGTTATAAGAGCGGTTCGCCCCGGGTGTTTGTCTCACAGATGTTAATCTGAGGCCTATAAGGTATAGCAAGGTAACTGTCACAGAGCCATGGCCCTGCTTACAGCAGCCCTCACCCTCAGCTCTCAACACCCAGGGGTCAGGCTCACATGACTGGCTGAGGCTGCTGTCAGTCAGCGAGGGACGAGCGTCACTGTCAGGTCTCCCTGAGGCCTATCAGTCCCTGTCACTGTCAGGAGGCGGGCAGCGCCTCATCACAGTGTCAGAGCCCGATTGGCTCGTTGCTCACCCCATCGCCAAACAGCCTCCGTCAGTGTCAGCATCAGCTGGCCTTGGAAGAGGGACTTAGATCAGACCCCTCCTTCCACTGTCAGCTGTGCTCCGCCTTTCACCTGGACTTCCCCTTCACTCAGGGATTCTGCATAATATGGCCTCGCTGCCCTTCCTGGGGCATCTGGCCCAGTTGCACTGCCTGCTGACCCATATGCTCCTGACCAACGTGCAACTGGCCATGGGCCTGGCCGTGTTGGAGCCCCTCAGTGTCATGTTGGTGCTGCTGCTCGGCCCCATGATCACGACCGTGACCGcgccccatccccctctcaccATGGTGATCGTGACCATGGCGGTTGCCATTGTGACCATGGCGGTTGCCATTGTGACCGTGACCATGGTGATGATGGCCGTGTCCACCATGAGTTGTCTCCCTTCCGGTGACTggcttctcctctccctcaggcTTTGCCTCTACTGTCCTGctctctctgctgtttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576545 lncRNA downstream 41538 41379244 ~ 41379486 (-) True G507895
TU576544 lncRNA downstream 41982 41378772 ~ 41379042 (-) True G507894
TU576537 lncRNA downstream 52095 41367960 ~ 41368929 (-) True G507887
TU576265 lncRNA downstream 152699 41268023 ~ 41268325 (-) True G507626
TU576244 lncRNA downstream 168959 41251860 ~ 41252065 (-) True G507605
TU576610 lncRNA upstream 1656 41463578 ~ 41464095 (-) True G507945
TU576613 lncRNA upstream 18233 41480155 ~ 41480364 (-) True G507948
TU576618 lncRNA upstream 24420 41486342 ~ 41486621 (-) True G507953
TU576622 lncRNA upstream 27827 41489749 ~ 41490032 (-) True G507957
TU576624 lncRNA upstream 32200 41494122 ~ 41494345 (-) True G507959
XM_021606513.2 mRNA downstream 16178 41396241 ~ 41404846 (-) True creb3l3l
XM_036980126.1 mRNA downstream 16439 41396241 ~ 41404585 (-) False creb3l3l
XM_036980125.1 mRNA downstream 17179 41396241 ~ 41403845 (-) False creb3l3l
XM_021606514.2 mRNA downstream 28609 41390670 ~ 41392415 (-) True gadd45ga
XR_002473698.2 mRNA downstream 121042 41298126 ~ 41299982 (-) True LOC110525030
XM_021606524.2 mRNA upstream 13057 41474979 ~ 41540150 (-) False ghra
XM_036980133.1 mRNA upstream 100162 41562084 ~ 41565978 (-) False fbxo4
XM_021606529.2 mRNA upstream 100162 41562084 ~ 41565993 (-) True fbxo4
XM_021606531.2 mRNA upstream 104129 41566051 ~ 41570657 (-) True c6h5orf51
XM_021606533.2 mRNA upstream 273181 41735103 ~ 41752960 (-) True rgs7bpa
TU575676 other downstream 878695 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 1531093 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 1582864 39837648 ~ 39838160 (-) True LOC110525932
TU575254 other downstream 1656248 39763291 ~ 39764776 (-) True LOC110525929
TU575200 other downstream 1796680 39623685 ~ 39624344 (-) True G506641
TU577033 other upstream 358933 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 682175 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 910519 42372441 ~ 42403220 (-) False G509034
TU578229 other upstream 1181597 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 1614770 43076692 ~ 43077157 (-) True G509902

Expression Profile