RNA id: TU576610


Basic Information

Item Value
RNA id TU576610
length 518
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G507945
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41463578 ~ 41464095 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAATATTATGCCTACTATATAGACACCAATGGAGGCCGCtcaggggaggacggctcatagtaatggctggactAGCTGGAAATGttcattttttacctttatttaactagacaagttaagaacaaattattatttacaatagcGGCCTACCGCAGCCCAACcctaacgatgctgggccaattgtgcactgccctatgggactcccaatcacagccagttgtgatacagcctggaatcgaaccacggtctgtagtgacgcctctagcactgagatacagtgccttagaccgctgcaccactcgggagcccctggAATGGTGTTGAATGGCTTGAATGGAGTATAGTGGCTGGAAATGTATCATACAtatcactccattccagccattattatgagccaacctcccctcagcagcctacactgacagacagagagggagttgaCTATTGTCATAACTGGGTTGTTCCACAAAAAGTTccttttgcgtccctttgatattttaattaGAAGTTGtccac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576545 lncRNA downstream 84092 41379244 ~ 41379486 (-) True G507895
TU576544 lncRNA downstream 84536 41378772 ~ 41379042 (-) True G507894
TU576537 lncRNA downstream 94649 41367960 ~ 41368929 (-) True G507887
TU576265 lncRNA downstream 195253 41268023 ~ 41268325 (-) True G507626
TU576244 lncRNA downstream 211513 41251860 ~ 41252065 (-) True G507605
TU576613 lncRNA upstream 16060 41480155 ~ 41480364 (-) True G507948
TU576618 lncRNA upstream 22247 41486342 ~ 41486621 (-) True G507953
TU576622 lncRNA upstream 25654 41489749 ~ 41490032 (-) True G507957
TU576624 lncRNA upstream 30027 41494122 ~ 41494345 (-) True G507959
TU576626 lncRNA upstream 34045 41498140 ~ 41498410 (-) True G507961
XM_021606520.2 mRNA downstream 4483 41431651 ~ 41459095 (-) False znf131
XM_021606517.2 mRNA downstream 24306 41431651 ~ 41439272 (-) False znf131
XM_021606518.2 mRNA downstream 24306 41431651 ~ 41439272 (-) False znf131
XM_021606521.2 mRNA downstream 24685 41431651 ~ 41438893 (-) False znf131
XM_036980127.1 mRNA downstream 24685 41431651 ~ 41438893 (-) False znf131
XM_021606524.2 mRNA upstream 10884 41474979 ~ 41540150 (-) False ghra
XM_036980133.1 mRNA upstream 97989 41562084 ~ 41565978 (-) False fbxo4
XM_021606529.2 mRNA upstream 97989 41562084 ~ 41565993 (-) True fbxo4
XM_021606531.2 mRNA upstream 101956 41566051 ~ 41570657 (-) True c6h5orf51
XM_021606533.2 mRNA upstream 271008 41735103 ~ 41752960 (-) True rgs7bpa
TU576563 other downstream 1656 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 24564 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 921249 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 1573647 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 1625418 39837648 ~ 39838160 (-) True LOC110525932
TU577033 other upstream 356760 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 680002 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 908346 42372441 ~ 42403220 (-) False G509034
TU578229 other upstream 1179424 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 1612597 43076692 ~ 43077157 (-) True G509902

Expression Profile