RNA id: TU576441


Basic Information

Item Value
RNA id TU576441
length 278
lncRNA type intronic
GC content 0.42
exon number 1
gene id G507797
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41505901 ~ 41506178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtccctcgacacaatcctgtcgtctcggagctctacagataattgattcaacttcatggcttggtttttgctctgacatgcactgtcaactgtgggacgttatatacacagttgtgtgcctttccaaatcatgcccaatcaattgaattaaccacaggtggactccaatgaagttgtagaaacatcaaggatgatcaaaggaaacaggatgcacatgagctcaatttcgagtctcatagcaaagggtctgaatacttatgcaaataaggtatctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576438 lncRNA upstream 5880 41499560 ~ 41500021 (+) True G507794
TU576434 lncRNA upstream 9164 41496387 ~ 41496737 (+) True G507790
TU576432 lncRNA upstream 10109 41495467 ~ 41495792 (+) True G507788
TU576430 lncRNA upstream 11643 41494035 ~ 41494258 (+) True G507786
TU576429 lncRNA upstream 12178 41493409 ~ 41493723 (+) True G507785
TU576392 lncRNA downstream 9367 41515545 ~ 41522567 (+) True LOC118964869
TU576391 lncRNA downstream 47254 41553432 ~ 41557576 (+) True G507747
TU576791 lncRNA downstream 251053 41757231 ~ 41757833 (+) True G508104
TU577030 lncRNA downstream 313605 41819783 ~ 41820050 (+) True G508300
TU577031 lncRNA downstream 313961 41820139 ~ 41820424 (+) True G508301
XM_021606522.2 mRNA upstream 43983 41458287 ~ 41461918 (+) False LOC110525974
XM_036980132.1 mRNA upstream 45138 41458305 ~ 41460763 (+) True LOC110525974
XR_002473854.2 mRNA upstream 317729 41182848 ~ 41188172 (+) True LOC110525969
XM_036980124.1 mRNA upstream 421453 40975379 ~ 41084448 (+) False efna5b
XM_036980123.1 mRNA upstream 421453 40975386 ~ 41084448 (+) True efna5b
XR_005052108.1 mRNA downstream 9561 41515739 ~ 41522572 (+) False LOC118964869
XM_021606527.2 mRNA downstream 64826 41571004 ~ 41677673 (+) False oxct1a
XM_021606528.2 mRNA downstream 70033 41576211 ~ 41677673 (+) True oxct1a
XM_021606530.2 mRNA downstream 172595 41678773 ~ 41700121 (+) True plcxd3
NM_001124407.1 mRNA downstream 216995 41723173 ~ 41729381 (+) True c7a
TU576412 other upstream 34493 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 646379 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 939472 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 958388 40544863 ~ 40547513 (+) False G506281
TU574667 other upstream 1246851 40257067 ~ 40259050 (+) True LOC110525949
TU577295 other downstream 623047 42129225 ~ 42131940 (+) True G508559
TU577938 other downstream 1060927 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 1061070 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 2151290 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 3678261 45184439 ~ 45185869 (+) True G512192

Expression Profile