RNA id: TU576944


Basic Information

Item Value
RNA id TU576944
length 2860
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G508222
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 41698218 ~ 41701127 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAACATACTGTACAGGCTTAGAAGCTTTATTTGATTAGTCATCTTCCCTTTAAAACAGAATCAGTTTCATTGCAATACACAAGGTTTGGTCTTTACAACAATTTCACAGCAATGGACTCATCACACCAAAAATGGACAGAAAGGTAAGGACTACAATATGGAGGGTATAATTATGTCAACATTAGATGACTTATAAATAATCATCTTTATAAGTAAATACATGTATGTAGGTGTCTTTTTACACTGTGTATTGCACTAGTTTGTTTGCTAGGTATATTACCGTCTCAGAGTTTAAGCGAAACATTGGACATTACCTATTTGGGACTGATaataattgttgttgttgttattgaatATCCTAACTTATCATGTTTGCAGTGCAGTGTACACATTTTGGTGATAAATGTTAAAGGGTCTTGAGTATTTTCTTACTTGAGATGAACACAAACAACTCAAGTAGTTATAGTCAGGTTAGGATAGCATCCAAAACGTATTAATCTGCTAAGTGACAAGAAATATAtttacaaatatattttgattcttGCACATAGTTCAttaattacaaaaaatatattttggaagtGTATTTGACTTTCAGAGATATGGACAAAACTCGTATTGGCCATATATTTGTGTGTTATTACAACTGAGATATTTCTGTAGAAGCCTTTCTTATGGATAATTCTTGGCATTCATTTTCATTTACAATTACATGGCAGTAAATCCATTGCACTTTATATACAAACTTTTCAcatgatataaaatatattttaagatTAAGTGATAGGGATGAAGTCATTAACACATACAAATTGTATGAAAATGTTCATACCTCTGaacaatacacacaaaacatacaaacactcaattaaatccttattctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtctgtctgtgtctgtctgtgtctgtctgtgtctgtctgtgtctgtctgtctgtgtctgtctgtgtctgtctgtgtctgtctgtccctctcttacataaaaacacacacactgaaaaaagTTGGAAATGGCACAATTTCGTACAGGACACACATTCACATATTCAAAATATAACATTTCCTCCTTTTTTTGGTTCACAATAAACATATTAGTTTACATAACAATTTATCAGAATACATTCTCTGTAAAAGATGCACTAATAATCgtaacatttttttggggggggagaagTGAGGCAAAGCTTTTGATATATATGCGAAGTTCTTGCATAATGTGCAAAACAAATTTTAGCAAAGGAAATGTGACACGTATTGTAGTCTTCACTACGCCGCAAGTGCCACTTCAAATAGAACTTTTCTTCCTAGTTTAGCATTTACAGTTTGTCCTGAATAGGTGCAGAGTAAAGCAAGGGAAACATATTTCTACTAGACTGAATGCAATTAAGCAGGCAAACACATGAGTAATAGAGAAGCAACAGATagctattctattatattctatacaaGTAAATGAACAGAAGAAAAGTtcaatgattaaaaaaaaaaattctaataTTGTGGTGAATATTTCAGTACAACAGACATGAGATTAGAATGATATCAAGCCCATTACGAGAAACATGAAATTAAACCTGTTTCATGGTCATCtacaacagtgtttcccaaccctggtcctcaagtacccccaacagttcacagttttgttgtagcccttgacaaacacacctcattcaactcattgaggacttgatgattagttgacaagttgaatcaggtgtgcttgtccagggttacaatacaaatgtgtactgttgggggagcttgaggaccagggttgggaaacactgatctaCAATATGCTACAGAGGGCACTCGGGAGAGGCAATCAATCAAAAGACACACAAATATCAATCGGTCTGGCAATCTGTAACATAGAGAAAGTGCTGTTACAGGTGGTCTAGGAGCTAAATCAATGTACTGCAAGGAGAAGTTATCAATTTACGCATTGTGGTGACAGGACTGATACAGAGACAAAATAATCAATAAATGTAGAAAGAGATCGAAAAACTATAATAACTATTTGGGAAGCTCCATCCATCAATCaaccaatccatccatccatccatcataaAGTAAATTCTACAGCCATGTGTGAGTAGTTGACATGCTAATCAGGTTGACGGCAATCAGATGTATTACTGGCACCAATGAAAATGAGTTTTGATGTAGGTTGGCCATCACTGTCACTAAAATACGAACAACATTTATGTCTGTAGAATATGCTAATAAGCTAGCCTAAGCCTCACAAGAGATGGAAATGCCAGAAACACGAGCTTGTGTGATTGGAGGATAGAAGCAGTTATCATTACAGCAGATTTGAAGCGAAGCCAAGCGAAGCGTCGTTAAAAACCAATTGCCCTTTTGACCCCCAAAACAGATAAAACCAAACATTTCCCATTCACTTTCGGCGCTCTAAACGAGCACCAAAGTCCATCCTCCctatctccacctccaccttcctttctcctcctatcttaacgtatccttctccctcctctctctctctctctctcgctctctcttcctctgtaaaCTCTGATAGCCCTATACAATAAGTCAGAGGAACGCCTCTCCTGAAAATGAACACCAAAGAGAAAGTGAGACTGAGCTGAGGACTTAACTCTTTGGTACCCCCTGTCTTTCAGTCTCAGGTGGCATTTTCCTCCTCATCATCCATATGATAGTTGAGCGTGATGACAGCGCTGATGAAGTCTCCCAGCTCCACAAAGTCAGCTGTGATGATGTTGATGCCGCTCTCTCCGGGCCTCTGGGCCCGAATCCACAGCATCATACTTGGAAGAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU576904 lncRNA downstream 9203 41645283 ~ 41689015 (-) True G508190
TU576851 lncRNA downstream 136531 41560765 ~ 41561687 (-) True G508141
TU576568 lncRNA downstream 158103 41521161 ~ 41540115 (-) True ghra
TU576626 lncRNA downstream 199808 41498140 ~ 41498410 (-) True G507961
TU576624 lncRNA downstream 203873 41494122 ~ 41494345 (-) True G507959
TU576985 lncRNA upstream 61916 41763043 ~ 41816199 (-) True G508255
TU577026 lncRNA upstream 116241 41817368 ~ 41817677 (-) True G508296
TU577029 lncRNA upstream 118326 41819453 ~ 41819779 (-) True G508299
TU577045 lncRNA upstream 125719 41826846 ~ 41827245 (-) True G508315
TU577046 lncRNA upstream 126187 41827314 ~ 41827549 (-) True G508316
XM_021606531.2 mRNA downstream 127561 41566051 ~ 41570657 (-) True c6h5orf51
XM_021606529.2 mRNA downstream 132225 41562084 ~ 41565993 (-) True fbxo4
XM_036980133.1 mRNA downstream 132240 41562084 ~ 41565978 (-) False fbxo4
XM_021606524.2 mRNA downstream 158068 41474979 ~ 41540150 (-) False ghra
XM_021606520.2 mRNA downstream 239123 41431651 ~ 41459095 (-) False znf131
XM_021606533.2 mRNA upstream 33976 41735103 ~ 41752960 (-) True rgs7bpa
XM_021604989.2 mRNA upstream 58352 41759479 ~ 41769211 (-) True si:dkey-250l23.4
XM_021606535.2 mRNA upstream 188732 41889859 ~ 42124064 (-) False ipo11
XM_036980135.1 mRNA upstream 188732 41889859 ~ 42124064 (-) True ipo11
XM_021606537.2 mRNA upstream 428091 42129218 ~ 42138980 (-) False dph7
TU576563 other downstream 236296 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 259204 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 1155889 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 1808287 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 1860058 39837648 ~ 39838160 (-) True LOC110525932
TU577033 other upstream 119728 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 442970 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 671314 42372441 ~ 42403220 (-) False G509034
TU578229 other upstream 942392 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 1375565 43076692 ~ 43077157 (-) True G509902

Expression Profile