RNA id: TU577295


Basic Information

Item Value
RNA id TU577295
length 1545
RNA type TUCP
GC content 0.49
exon number 5
gene id G508559
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42129225 ~ 42131940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGCAAATGTATTGCTCAAAAAAGTATACACGTGAAAGAACAAATTGTACAAGTGGATTAAACAAATGTTTTTCCTGCATTGTAACAGTTATAACAAATCCATGACCCACTTATCAGGGAATCTTTAAGATCCAATATGTATACTGACCTAAAAGGTGTTGGTTTTTCATTAAAATGCATTATTAAATCAGGGTGGAATGATATTGATCGCACAATCATAAATAGTTCAGATATCTGCAAGTGATTCAAAGTACGCCTATTTTATCCAAGAAAGGTTGAATAAATGCCAGGTGCTTTCGCATCATGTGTGCAGTATTGGAACGAAAGCATAATGTTTACAGAAAGgtaaacatttgacatttttgcaacaATTGACattcaaaaaattcaaaaaatgtTATTTGTGGTTTTTGTTTGAAGGTGAATATTCCTCTAGTAGTAGTGAGAGACCGCTATGGTGAGATATCATATGCATTCTTCGGTCTTTGCCTCCTGATTTAATGGGCTTGGCCAATAAGCAAAAACATGTCTCCAAACCTCGGCAGCATTCCAatcggcaccctattccctacgtgtAGTGCACTTTGCATACTTTGCTGGTGCTACTGCCTGGCCACCATCTCCTTCACCAACAgcccttctttctccctccccctgggCCGTCCCAGTGCAGCCTGCCTCCTGTGGGGTCCAGTCCCAGCGCCACACATGAAGCATGTGGTCATAGAAGGAACAGCTGGCCATCAGGCAGGACACTGCAGGGCTGTCCACGGCAGGGTTAGGACAGGCAGGTGGGCCTGCCACAGAGCTAGCAGATGACGGGGATAAACTCTCAGGTATGTAACGTCCTGAGTCATCCTCCAAGGAGGTGTCGAAGCTGGCAGTGGGAGATTCATACTGAATCCTTAGGTGTCCTCCTGTACGGCTCTCTGTTTGGGACTGTCTTGACTCTGTGGTCTCCAGAGGGGAGCAGGGGGGAGGCTCCTCCAGGGAAAGCTGGGACCAGTCAGCCCCATAGGCCAGGGAATTGTGGAGGATATAGGAGGCTAGGACAGAACACGCTCCTCCGCTGCCCTccagagcttgCTGGCAGTGAAGGATGTGGAAATCGTTGTGCATGCAGGCAGCCAACAGCAAGTGCTCATGGGTAGGATGCCACTTCAGTCTCCACACTCCGCCACCCAGAGCACTCTCACTGAGAGGCTGACGCATGTTCCTCTCGTCCCACAGGAGCACCTGCTCGTCATAGCTGCCTGTGGCTAGAATGCGCTCCCGGTGTGGGCTACTGTGTACACTGCATACACCCATCGAGTGCCTCTTGCTGGTGAATGTGGGGGAAGAGGGACCCATCCTGAGATCCCATCCCTTAAGTTTGCAGTCATCCCCACCGGAGTAGACAAGCTGAGTATCCCAGTATGAGAATGCTGAGATCCAGGCTTCAAAGTCGTGGGCCTTCCACTGTGATACAGCAGTGAGACTGTTCTCCCCCAGGGACAAGACGTTGACACAGCCTGCAGAGTCACTGGACACCACACGCACGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577300 lncRNA upstream 1628 42125122 ~ 42127597 (+) True G508562
TU577288 lncRNA upstream 5199 42123517 ~ 42124026 (+) True G508554
TU577276 lncRNA upstream 24133 42104868 ~ 42105092 (+) True G508542
TU577273 lncRNA upstream 28391 42100627 ~ 42100834 (+) True G508539
TU577271 lncRNA upstream 29957 42099061 ~ 42099268 (+) True G508537
TU577299 lncRNA downstream 12111 42144051 ~ 42145233 (+) True G508561
TU577294 lncRNA downstream 13467 42145407 ~ 42147244 (+) True G508558
TU577424 lncRNA downstream 187952 42319892 ~ 42332493 (+) True G508677
TU577466 lncRNA downstream 240024 42371964 ~ 42372193 (+) True G508717
TU577829 lncRNA downstream 286781 42418721 ~ 42418976 (+) True G509060
XM_021606534.2 mRNA upstream 355270 41771717 ~ 41773955 (+) True htr1aa
XR_005052109.1 mRNA upstream 372022 41754679 ~ 41757203 (+) True LOC118964870
NM_001124407.1 mRNA upstream 399844 41723173 ~ 41729381 (+) True c7a
XM_021606530.2 mRNA upstream 429104 41678773 ~ 41700121 (+) True plcxd3
XM_021606527.2 mRNA upstream 451552 41571004 ~ 41677673 (+) False oxct1a
XM_036980136.1 mRNA downstream 5113 42137053 ~ 42143608 (+) False paxx
XM_021606540.2 mRNA downstream 7127 42139067 ~ 42143608 (+) False paxx
XM_021606539.2 mRNA downstream 7128 42139068 ~ 42143608 (+) True paxx
XM_021606542.2 mRNA downstream 112565 42244505 ~ 42249266 (+) True LOC110525988
XM_021606545.1 mRNA downstream 240591 42372531 ~ 42415108 (+) False stxbp1b
TU576412 other upstream 657817 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 1269703 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 1562796 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 1581712 40544863 ~ 40547513 (+) False G506281
TU574667 other upstream 1870175 40257067 ~ 40259050 (+) True LOC110525949
TU577938 other downstream 435165 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 435308 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 1525528 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 3052499 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 3085787 45217727 ~ 45220782 (+) False LOC110526028

Expression Profile