RNA id: TU577645


Basic Information

Item Value
RNA id TU577645
length 1458
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G508888
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42142383 ~ 42143840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggccgaatactttcgcaaggcactgtaactgatgATGGTTGATAGCTAAGTAAGTTTTGACGTGAGTCCTGAATCGTTGGCCTTTTATTTGAAATCACTTTACTAGACTAAGTGAGTCAGAGGAAAGCTGCACCAGATTTCCTCTTTTAAGAGAATGTAACGGAATGATTCTATgttgatgatgatgctgatggtGCCTCCCAAATCTCTAGCCTCTTCATTTGGACACTGTATATTTTTGTCTCGACATGATAATTAGAGCACTTTCTACTGAATGCTGAATTGTGTGCTTCTACAAATCATAATGATTTGTTTCTTTCAACAAGATCCTATGTTGGACACCATGTAATAACTTACTTTACAATGAAGGTAATCAACAAGATAATTTAAGTAATCCAAAAACCGTGAAAAGAACTGAACTTAATAATAATTATATCCTGTAATACCTATAAGAAAGGACACATACAGGATTTACAATAATAAGCATACACTACTGCACTACCATCACTGTGAGAAAAAGAAGTTGAactttctgatcattgtttagttTGTACTTGAGATTGTATGATTTACAAGATGCTTTCAAGTCTGCTGACTATTTCTTTTGGAAGTTGGAGCACATTAGGAATTTTGAAGAACACCCACACCACGTCATTAATGAAGAGAAATGTTTGTCCTGAATATGTATGTTGCCATGTGATTTGAAATGGATATGTTCATGGGGTGTTTGTTTTGTAAAGATATAGTTGTGATCTCTCTTAATTCCTCTCAGAAATTGCTTAAGTTATTTCGTGGACTAATTCTATGTAATTGAACACATTGATTTCTTAATGGGTGACCTATTTGGActtatttgaaaaaaaaaaatatcttgaCTGGGGTGTTTGTTATCCTTTTACTATTAAACAAGGAAACTAATTGTTGTAATTTGTTTTCCTCAGAATGTAAAGTAGGTGAAATGTTTTACTGAAGTCCAGGACAAAATTATGATTTTTCATGTGGACTAATATGAGAATGAGAAACCAAGCCTGTCTTTGAAATGTGTTAATTAATGCTACCTGTATATGTTGGGAGCTGAAAAGCTGTGAGGAAAGATGTAATGAACTTGAGGTTAACTTGTGTCCTTTAACTCAAGGCTAAATGATGACCGTGATGCTCTGCTTTAACTAGAGTTCTGTGACTCTGGACCTCAAAGGAACAGCGATGTGGTTTAGAACCATTTTAGATGGTTTTGATCATTATTTGATCTATTGCAACTGTTGTTGCCACCCAACATCTCTGAATACTTAAACATGTATTTGAAGTTTCCCTGAGCAAAAAAAAGCttgatttaaaaaattaaaaaaaatgtaaaattgaCAAGAACTTATCGTTCAAAGGTctctggagtaaaagtaaaacaaacagttttttttaaacaacaccAGCAAATATGAGAATTGGGTGCAATTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577663 lncRNA downstream 21992 42120186 ~ 42120391 (-) True G508902
TU577660 lncRNA downstream 26641 42115494 ~ 42115742 (-) True G508899
TU577638 lncRNA downstream 38869 42103030 ~ 42103514 (-) True G508884
TU577636 lncRNA downstream 40233 42101869 ~ 42102150 (-) True G508882
TU577630 lncRNA downstream 45383 42096757 ~ 42097000 (-) True G508876
TU577814 lncRNA upstream 242233 42386073 ~ 42386706 (-) True G509045
TU577803 lncRNA upstream 255136 42398976 ~ 42402230 (-) True G509034
TU577804 lncRNA upstream 266487 42410327 ~ 42417077 (-) True LOC118964871
TU577827 lncRNA upstream 273985 42417825 ~ 42418041 (-) True G509058
TU577828 lncRNA upstream 274271 42418111 ~ 42418353 (-) True G509059
XM_021606536.2 mRNA downstream 3328 42129218 ~ 42139055 (-) True dph7
XM_021606537.2 mRNA downstream 3403 42129218 ~ 42138980 (-) False dph7
XM_021606535.2 mRNA downstream 18319 41889859 ~ 42124064 (-) False ipo11
XM_036980135.1 mRNA downstream 18319 41889859 ~ 42124064 (-) True ipo11
XM_021604989.2 mRNA downstream 373172 41759479 ~ 41769211 (-) True si:dkey-250l23.4
XM_036980140.1 mRNA upstream 2662 42146502 ~ 42241438 (-) False LOC110525987
XM_036980143.1 mRNA upstream 2662 42146502 ~ 42241438 (-) False LOC110525987
XM_036980141.1 mRNA upstream 2679 42146519 ~ 42241438 (-) False LOC110525987
XM_036980138.1 mRNA upstream 2819 42146659 ~ 42241438 (-) False LOC110525987
XM_036980139.1 mRNA upstream 2819 42146659 ~ 42241438 (-) False LOC110525987
TU577033 other downstream 321173 41820855 ~ 41821210 (-) True G508303
TU576563 other downstream 680461 41421024 ~ 41461922 (-) True G507906
TU576567 other downstream 703369 41434975 ~ 41439014 (-) True znf131
TU575676 other downstream 1600054 40540659 ~ 40542329 (-) True G507063
TU575349 other downstream 2252452 39887022 ~ 39889931 (-) True G506785
TU577652 other upstream 257 42144097 ~ 42144885 (-) True G508891
TU577801 other upstream 228601 42372441 ~ 42403220 (-) False G509034
TU578229 other upstream 499679 42643519 ~ 42645869 (-) True G509432
TU578716 other upstream 932852 43076692 ~ 43077157 (-) True G509902
TU578766 other upstream 978706 43122546 ~ 43123092 (-) True G509949

Expression Profile