RNA id: TU577294


Basic Information

Item Value
RNA id TU577294
length 1642
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G508558
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42145407 ~ 42147244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaatactttcgcaaggcactgtatttcaaaaTCAATCACAGATCAGATATCTGTCATGTATACatttagaaaataaataattattcttGCCACAgaaaaatatagatatatatacactgtatgacACAACACTAGTTTGACTGGTTTCATGACAGCATGCTCTCAAGGCAGGTAGAGGATTTTAAAGGGGGTTGGGGTGGAATCTCTGGTTGAATAGGAACAGTgagtcccgaatggcaccctattcccttcagtACATGATGCACTACTATTGAACAGAGCCccatgggccatggtcaaaagtagtgcactatataggaaatagggtgtgaTTTAGGATGCAACTTGTACTTTGGCAGGGACGGAACAAATTTCACCAATGTTGAATCACAAATTCACTGCGTCAAACATCTGATAAAAGATTAGACTGAGTAAGGTGGTCATATCAGAAGGAATTATATGATATTTTGTGACATCATCGGCAGTGAATGAAGCCAACTTACCTAGTAGCGACATTAATACCTAATCAGACCTTTTGATTTCAGTCCTTTCTAGATGCACCGCATTGGTTTTCAGTGTTCCCATctatcaatatatataaaaaaaatacatataaacATTCCTATAACAACATATCTCCATTAAAATGCAAGCATTCTCACCGTAGCAGTATGTTTCCCATGACAGAAGACCGATCTCTTCGTCACCTCAGCCTTTAACCATGGCTAACTCTGACAGCTTTGAGAGGCTGACTTCActtctctgtccttctcttctctgtcccacTGTGTCTCCTTCTCCGAGTCCAATGCCTCAGTCTCTGTCACTGTTAGGTGCTTGAGGCTAAAAATTAAATGTATCTTACTTTTCCCTTGGGTAGATAGAGACGGTCCATTCTCTTCCTAGTACATGTAAATCCGTGGAGGCTggcgggaggagctataggaggatggactcattgtaatggctggaattaaatcaatggaatggaatcaaacattccagccattacaatgagccctgcctcctatagctcctcccaccagcctcctctgatgtatatttcctcctctctctttctaatagACACACCCTCTCTGAATTTCCTCCTCCCAATTTGTATATCTAGCCACACCCTCCCTGAGTTTCCTCCTCCCACGTTGTCTGTCCAGCCACGCCCCCTCTCTGAGTTTCCACAGTTCAACAGACAGTATCTGTGTTCAAGGAGAGCTGCACCTGCCATGGAGACATACCGCTGATGAGGCCCTCATCGTCGTCACTCTCCAGTTCCTCCGGCTCTTCGCTGACCAGGGCGCTGAGCTCCGTATTGGCCGGCCGGGGCCTCAGCAGGGTGAGCAGGCGCTGCAGGGGTGACTGGCCTCCACCAGGGGGGGAACTCTCCTGCTGCTCCAGGTTGTCACTTTGCTTCTTGGCAAAGTTCACGAACACCTAGGGAAGGGAGAGAACGCAGAGAAACAAAGACAAGGGGATATAATTTAGACTTTTTATTTTAGATGTTTCAGCTGCAAGGCCTTCCTCAAGTCAACAAACAAACATGAAAGGGAGCAAAAACCGATGTCTGTGCATGTTTTAATAAACATTTAAAATCACCTCATCTGTACTGTCTCAGTGTGGAAATGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU577299 lncRNA upstream 174 42144051 ~ 42145233 (+) True G508561
TU577300 lncRNA upstream 17810 42125122 ~ 42127597 (+) True G508562
TU577288 lncRNA upstream 21381 42123517 ~ 42124026 (+) True G508554
TU577276 lncRNA upstream 40315 42104868 ~ 42105092 (+) True G508542
TU577273 lncRNA upstream 44573 42100627 ~ 42100834 (+) True G508539
TU577424 lncRNA downstream 172648 42319892 ~ 42332493 (+) True G508677
TU577466 lncRNA downstream 224720 42371964 ~ 42372193 (+) True G508717
TU577829 lncRNA downstream 271477 42418721 ~ 42418976 (+) True G509060
TU577830 lncRNA downstream 272348 42419592 ~ 42421183 (+) True G509061
TU577831 lncRNA downstream 274098 42421342 ~ 42422146 (+) True G509062
XM_036980136.1 mRNA upstream 1799 42137053 ~ 42143608 (+) False paxx
XM_021606540.2 mRNA upstream 1799 42139067 ~ 42143608 (+) False paxx
XM_021606539.2 mRNA upstream 1799 42139068 ~ 42143608 (+) True paxx
XM_021606534.2 mRNA upstream 371452 41771717 ~ 41773955 (+) True htr1aa
XR_005052109.1 mRNA upstream 388204 41754679 ~ 41757203 (+) True LOC118964870
XM_021606542.2 mRNA downstream 97261 42244505 ~ 42249266 (+) True LOC110525988
XM_021606545.1 mRNA downstream 225287 42372531 ~ 42415108 (+) False stxbp1b
XM_021606548.1 mRNA downstream 225287 42372531 ~ 42415108 (+) True stxbp1b
XM_036980149.1 mRNA downstream 456064 42603308 ~ 42643804 (+) False camsap1b
XM_036980147.1 mRNA downstream 456065 42603309 ~ 42645904 (+) False camsap1b
TU577295 other upstream 13467 42129225 ~ 42131940 (+) True G508559
TU576412 other upstream 673999 41469551 ~ 41471408 (+) True G507768
TU574791 other upstream 1285885 40568726 ~ 40859522 (+) True fbxl17
TU574820 other upstream 1578978 40566067 ~ 40566429 (+) True G506285
TU574816 other upstream 1597894 40544863 ~ 40547513 (+) False G506281
TU577938 other downstream 419861 42567105 ~ 42569384 (+) False G509160
TU577937 other downstream 420004 42567248 ~ 42570169 (+) True G509160
TU579244 other downstream 1510224 43657468 ~ 43658493 (+) True G510416
TU581131 other downstream 3037195 45184439 ~ 45185869 (+) True G512192
TU581209 other downstream 3070483 45217727 ~ 45220782 (+) False LOC110526028

Expression Profile